Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001366-TA|BGIBMGA001366-PA|undefined
(242 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81457-1|CAB03812.1| 423|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z73969-20|CAA98241.1| 643|Caenorhabditis elegans Hypothetical p... 28 5.3
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 28 5.3
U21487-1|AAA96949.1| 643|Caenorhabditis elegans ribonucleoprote... 28 5.3
L41729-1|AAC41575.1| 643|Caenorhabditis elegans Ro ribonucleopr... 28 5.3
AL021479-7|CAA16325.1| 643|Caenorhabditis elegans Hypothetical ... 28 5.3
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 28 5.3
U41109-16|AAO12424.1| 440|Caenorhabditis elegans Hypothetical p... 28 7.0
Z78539-5|CAB01731.1| 591|Caenorhabditis elegans Hypothetical pr... 27 9.2
U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical p... 27 9.2
AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical ... 27 9.2
AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical ... 27 9.2
>Z81457-1|CAB03812.1| 423|Caenorhabditis elegans Hypothetical
protein C01G12.1 protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 20 LVKYMEKYPVLALSCARSREEVIEARKIWEKIAQSLN 56
L+ + KYP L R + +E +++WE IA++++
Sbjct: 11 LINEVRKYPCLYNHSRRGSGDTMERQRLWESIAKNID 47
>Z73969-20|CAA98241.1| 643|Caenorhabditis elegans Hypothetical
protein C12D8.11 protein.
Length = 643
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 14 RKHLEILVKYMEKYPVLALSCARSREEVIEARKIWEKIAQSLNKVDEKVYK 64
R E L ++ K ++ S EEV E K+W+K A L +E++ K
Sbjct: 274 RLEREQLFRFAVKGDLVKRKRKMSVEEVAEVEKVWDKKALKLPYTEEQLIK 324
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 5 HPMYRRLVSRKHLEILVKYMEKYPVLALSCARSREEVIEARKIWEKIAQSLNKVDEKVYK 64
HP Y+ K+LE +VK +E P +EE I+A I + I +V +K++K
Sbjct: 64 HPGYQ-FAYTKYLEEVVKILESDPKFNERLKNMKEEDIKAGNIADHIDDLPQEVFDKLHK 122
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 5 HPMYRRLVSRKHLEILVKYMEKYPVLALSCARSREEVIEARKIWEKIAQSLNKVDEKVYK 64
HP Y+ K+LE +VK +E P +EE I+A I + I +V +K++K
Sbjct: 64 HPGYQ-FAYTKYLEEVVKILESDPKFNERLKNMKEEDIKAGNIADHIDDLPQEVFDKLHK 122
>U21487-1|AAA96949.1| 643|Caenorhabditis elegans ribonucleoprotein
Ro autoantigenhomolog protein.
Length = 643
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 14 RKHLEILVKYMEKYPVLALSCARSREEVIEARKIWEKIAQSLNKVDEKVYK 64
R E L ++ K ++ S EEV E K+W+K A L +E++ K
Sbjct: 274 RLEREQLFRFAVKGDLVKRKRKMSVEEVAEVEKVWDKKALKLPYTEEQLIK 324
>L41729-1|AAC41575.1| 643|Caenorhabditis elegans Ro
ribonucleoprotein autoantigen protein.
Length = 643
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 14 RKHLEILVKYMEKYPVLALSCARSREEVIEARKIWEKIAQSLNKVDEKVYK 64
R E L ++ K ++ S EEV E K+W+K A L +E++ K
Sbjct: 274 RLEREQLFRFAVKGDLVKRKRKMSVEEVAEVEKVWDKKALKLPYTEEQLIK 324
>AL021479-7|CAA16325.1| 643|Caenorhabditis elegans Hypothetical
protein C12D8.11 protein.
Length = 643
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 14 RKHLEILVKYMEKYPVLALSCARSREEVIEARKIWEKIAQSLNKVDEKVYK 64
R E L ++ K ++ S EEV E K+W+K A L +E++ K
Sbjct: 274 RLEREQLFRFAVKGDLVKRKRKMSVEEVAEVEKVWDKKALKLPYTEEQLIK 324
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 5 HPMYRRLVSRKHLEILVKYMEKYPVLALSCARSREEVIEARKIWEKIAQSLNKVDEKVYK 64
HP Y+ K+LE +VK +E P +EE I+A I + I +V +K++K
Sbjct: 67 HPGYQ-FAYTKYLEEVVKILESDPKFNERLKNMKEEDIKAGNIADHIDDLPQEVFDKLHK 125
>U41109-16|AAO12424.1| 440|Caenorhabditis elegans Hypothetical
protein F52E1.13b protein.
Length = 440
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 160 ANNNEEIIHIEYADIKPNLSQDPIELDHDRKSLEELRRDLLKFELKKQ 207
++NN+E+I + +I +L++D + +K ++R ++K KK+
Sbjct: 153 SSNNDEVIEFKVPEITVSLAEDTSNSEEQKKK-RNIKRAIMKKVFKKK 199
>Z78539-5|CAB01731.1| 591|Caenorhabditis elegans Hypothetical
protein C31E10.6 protein.
Length = 591
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 10 RLVSRKHLEILVKYMEKYPVLALSCARSRE-----EVIEARKIWEKIAQSLNKVDEKVYK 64
R++ ++L+ ++KYP S R E+ EA+ +EK Q L K+ K+Y
Sbjct: 208 RIIIAEYLQYGQTGVKKYPSFVPSDEEGRHKTGLSEISEAQ--YEKQRQDLKKLSNKIYS 265
Query: 65 TGCKWSRYWADWKF 78
++ +AD F
Sbjct: 266 ASSDTTKQFADKLF 279
>U23510-10|AAC46780.1| 979|Caenorhabditis elegans Hypothetical
protein R12C12.1a protein.
Length = 979
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 159 LANNNEEIIHIEYADIKPNLSQDPIELDHDRKSLEELRRDLLKFE 203
L N EI+H +Y D +D L+ +K EE++ + +E
Sbjct: 394 LRNAGHEIVHKDYFDTLKIRLKDKAALEETKKRAEEMKMNFRYYE 438
>AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical
protein Y74E4A.1a protein.
Length = 425
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 41 VIEARKIWEKIAQSLNKVDEKVYKTGCKWSRYWADWKFKIRRKYICLKKC 90
++EAR W + SL + Y CKW D + KY L++C
Sbjct: 1 MVEAR--WISLLLSLVTLSVAAYDIDCKWKSNITDIEDVAHHKYQVLEEC 48
>AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical
protein Y74E4A.1b protein.
Length = 428
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 41 VIEARKIWEKIAQSLNKVDEKVYKTGCKWSRYWADWKFKIRRKYICLKKC 90
++EAR W + SL + Y CKW D + KY L++C
Sbjct: 1 MVEAR--WISLLLSLVTLSVAAYDIDCKWKSNITDIEDVAHHKYQVLEEC 48
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,293,466
Number of Sequences: 27539
Number of extensions: 200366
Number of successful extensions: 533
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 14
length of query: 242
length of database: 12,573,161
effective HSP length: 79
effective length of query: 163
effective length of database: 10,397,580
effective search space: 1694805540
effective search space used: 1694805540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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