GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001366-TA|BGIBMGA001366-PA|undefined
         (242 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ...    30   1.6  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    29   2.8  
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ...    28   6.6  

>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
            contains similarity to glucan synthases
          Length = 1973

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 16   HLEILVKYMEKYPVLALSCARSREEVI--EARKIWEKI-AQSLNKVDEKVYK 64
            H + ++  M KYP L ++    REE++    +K++  I  +++N  D+++Y+
Sbjct: 1284 HAQDILDLMIKYPSLRVAYVEEREEIVLDVPKKVYYSILVKAVNGFDQEIYR 1335


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 45  RKIWEKIAQSLNKVDEKVYKTGCKWSRYWADWKFKIRRKYICLKKCQSNGVACSVRLSPY 104
           RK  E +   +NKVDEKV  T  +     +D K  I R    ++   ++    S +L   
Sbjct: 404 RKFLESLLDDINKVDEKVVGTILRIKVSGSDQKLDIHR---LVQVVGTSKAIASYQLGAK 460

Query: 105 EQKV-IKILTDEEGNLLSPSALSHISLFQESEGARSKSTNHCG 146
              V ++IL  ++  ++S   LS  ++  E E  R + +  CG
Sbjct: 461 TTDVMLEILNLDKREVISIDQLSDQNI-TEDECKRLRQSIKCG 502


>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1933

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 20   LVKYMEKYPVLALSCARSREEVIEARK---IWEKIAQSLNKVDEKVYK 64
            +++ M KYP L ++    REE +  +     +  + +  +K+DE++Y+
Sbjct: 1241 ILQLMLKYPSLRVAYIDEREETVNGKSQKVFYSVLLKGCDKLDEEIYR 1288


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,083,157
Number of Sequences: 28952
Number of extensions: 191275
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 3
length of query: 242
length of database: 12,070,560
effective HSP length: 79
effective length of query: 163
effective length of database: 9,783,352
effective search space: 1594686376
effective search space used: 1594686376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)