Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001365-TA|BGIBMGA001365-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
         (1098 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    34   0.60 
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr...    33   1.0  
At4g24830.1 68417.m03557 arginosuccinate synthase family contain...    33   1.4  
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    31   4.2  
At5g66055.2 68418.m08322 ankyrin repeat protein / AKRP (AKR) ide...    31   5.6  
At5g66055.1 68418.m08321 ankyrin repeat protein / AKRP (AKR) ide...    31   5.6  
At5g05250.1 68418.m00562 expressed protein                             30   7.4  
At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein si...    30   7.4  
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P...    30   7.4  
At5g15470.1 68418.m01811 glycosyl transferase family 8 protein c...    30   9.8  
At3g02450.1 68416.m00232 cell division protein ftsH, putative si...    30   9.8  
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea...    30   9.8  

>At2g33240.1 68415.m04072 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin my5A
            (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 33.9 bits (74), Expect = 0.60
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 927  EGGADSGDDTAEVHFSQESSKQDDVTPERDEDRKPVKVVLRSNLTFNIGDDFFPWRPRED 986
            +G  DS  + +    S ESS+Q+  +PE+  +  P + +   N +  + +D+   +P ED
Sbjct: 1468 QGLKDSSHEFSAETLSAESSEQN--SPEKPSEENPPEKLSEDNSSGKLSEDYLAAKPSED 1525

Query: 987  EKDDTASTKDAKAQ 1000
                  S ++++A+
Sbjct: 1526 NSPAKPSEENSQAK 1539


>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
           protein / F-box family protein contains similarity to
           F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
           contains Pfam profiles PF00514:
           Armadillo/beta-catenin-like repeat, PF00646: F-box
           domain
          Length = 930

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 231 LTRARLAGARYATADALVFLDAHCETQRD--WLRPLLQELKESPRAVLVPIIDVIDASNF 288
           L + RL+G R  T++A+  L  HC    D  +L  L  + +   + V V  + V   SN 
Sbjct: 188 LKKLRLSGIRDVTSEAIEALAKHCPQLNDLGFLDCLNIDEEALGKVVSVRYLSVAGTSNI 247

Query: 289 YYSVQDTQGLMKARLAGARVARGDV 313
            +S+         +L G  V+R D+
Sbjct: 248 KWSIASNNWDKLPKLTGLDVSRTDI 272


>At4g24830.1 68417.m03557 arginosuccinate synthase family contains
           Pfam profile: PF00764 arginosuccinate synthase
          Length = 494

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 579 KYIPSTSQLQHVDSGLCLDAGFEVGADVTARACSGK 614
           KY+  TS  + V +   +D   EVGAD  A  C+GK
Sbjct: 180 KYLLGTSMARPVIAKAMVDVAAEVGADAVAHGCTGK 215


>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 protein
            GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 939  VHFSQESSKQDDVTPERDEDRKPVKVVLRSNLTFNIGDDFFPWRPREDEKDDT--ASTKD 996
            V   +ESS +DD + E +  +KP   + +     +   D       EDEK  T  A+   
Sbjct: 150  VKAKKESSSEDDSSSEDEPAKKPAAKIAKPAAKDSSSSDDDSDEDSEDEKPATKKAAPAA 209

Query: 997  AKAQQIQLIIKPNPGILVDDQRPA---ADVRSDVTKTSNKRIDKHKDLSNYDRSRIRHVS 1053
            AKA         +     +D++PA   AD ++    +S++  +  +D S  +    +  S
Sbjct: 210  AKAASSSDSSDEDSDEESEDEKPAQKKADTKASKKSSSDESSESEEDESEDEEETPKKKS 269

Query: 1054 GDGNIDQRQEDS 1065
             D  +   ++ S
Sbjct: 270  SDVEMVDAEKSS 281


>At5g66055.2 68418.m08322 ankyrin repeat protein / AKRP (AKR)
            identical to ankyrin repeat protein (AKRP) [Arabidopsis
            thaliana] SWISS-PROT:Q05753
          Length = 359

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 984  REDEKDDTASTKDAKAQQIQLIIKPNPGILVDDQRPAADVRSDVTKTSNKRIDKHKDLSN 1043
            R+ + +D  + K+AK  Q++ +I   PG   DD   ++D  + V+  S +   K+   + 
Sbjct: 148  RKVDLNDFLTYKEAKLAQLRPVILDKPGNFSDDSGASSDGETAVSSPSERVAPKNPRWAV 207

Query: 1044 YDRSRIRHVSGDGNIDQRQEDSFEDD 1069
            Y +    HV+   N D+      + D
Sbjct: 208  YGKG-FDHVAKFFNSDKYDPSDKKSD 232


>At5g66055.1 68418.m08321 ankyrin repeat protein / AKRP (AKR)
            identical to ankyrin repeat protein (AKRP) [Arabidopsis
            thaliana] SWISS-PROT:Q05753
          Length = 435

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 984  REDEKDDTASTKDAKAQQIQLIIKPNPGILVDDQRPAADVRSDVTKTSNKRIDKHKDLSN 1043
            R+ + +D  + K+AK  Q++ +I   PG   DD   ++D  + V+  S +   K+   + 
Sbjct: 148  RKVDLNDFLTYKEAKLAQLRPVILDKPGNFSDDSGASSDGETAVSSPSERVAPKNPRWAV 207

Query: 1044 YDRSRIRHVSGDGNIDQRQEDSFEDD 1069
            Y +    HV+   N D+      + D
Sbjct: 208  YGKG-FDHVAKFFNSDKYDPSDKKSD 232


>At5g05250.1 68418.m00562 expressed protein
          Length = 239

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 13  AKIGILFTLVIALITFFEQWRGGKRSVDATFSDPIEAEFERQIL-----EDEARIIPGLG 67
           + IG +   +   +T  E+ RGG+RS   +  D  E E ER+ L     E    I+  L 
Sbjct: 46  SSIGTISASIGEAVTEIEKQRGGRRSGGRSRGDRWEVEAEREKLDRWMKESVTEIVKNLS 105

Query: 68  DGGVAAYLTGEDKRLG 83
           +  +  +L   DK  G
Sbjct: 106 EAPLLVHLYTGDKEEG 121


>At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 352

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 13/79 (16%)

Query: 365 VVRGFKVGGFTFTGHFTWIDVPEREKKRRGSDIAPTWSPTMAGG-LF-AINRAYFWELGA 422
           ++R FK  G    GH    D P+ +         P W  +++G  L+ A+ R  F  +  
Sbjct: 137 MLRFFKQHGVAVRGHNVLWDDPKYQ---------PGWVNSLSGNDLYNAVKRRVFSVVSR 187

Query: 423 YDEQMAGWG--GENLEMSF 439
           Y  Q+AGW    ENL  SF
Sbjct: 188 YKGQLAGWDVVNENLHFSF 206


>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 661

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 737 DKDVKRGGVTVLRDAEIKKMKIKSHDDIDDVTTSKPSHKKFKTTPSVKRIPAVNVATLAP 796
           D D+   GV+   D E  K    ++ DID +  S P  ++ ++T + +RI     +    
Sbjct: 236 DADIAEVGVSRNFDGEFAKATEGNNSDIDFIEKS-PGSRRLRSTTAARRISKAKTSPKKK 294

Query: 797 PAHRGKQLNKKIIIE 811
              + K LN+ I+ E
Sbjct: 295 GNVKEKILNELIVKE 309


>At5g15470.1 68418.m01811 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 532

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 418 WELGAYDEQMAGWGGENLEMSFRIWQCGGTLETVPCSRVGHVF---RSFHPYGLPAQSDT 474
           W      E    W  ENL+ +  +W+  GTL     +  GHV     S+H  GL  QS T
Sbjct: 424 WRKTNIRETYHSWLRENLKSNLTMWKL-GTLPPALIAFKGHVHIIDSSWHMLGLGYQSKT 482

Query: 475 HGINTARMAEV 485
           +  N  + A +
Sbjct: 483 NIENVKKAAVI 493


>At3g02450.1 68416.m00232 cell division protein ftsH, putative
           similar to SWISS-PROT:P46469 cell division protein ftsH
           homolog [Lactococcus lactis]; contains Pfam domain,
           PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
           diverse cellular 'A'ctivities)
          Length = 622

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 550 GRSENDVNDDTARRVLMTSCHGKQRGQKWKYIPSTSQLQHVDSGLCLDAGF 600
           GRS ND  D T  + L+T   G +   K   I +T++ + +DS LC    F
Sbjct: 443 GRSFNDERDQTLNQ-LLTEMDGFESDTKVIVIAATNRPEALDSALCRPGRF 492


>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to block of proliferation protein Bop1
           (GI:1679772) [Mus musculus]
          Length = 753

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 895 DDSRENWDVGESRFRRNNSXXXXXXXXXXXXDEGGADSGDDTAEVHFSQESSKQDDVTPE 954
           D + E  + G+  F  ++             D+G    G D  E H S E S++ +   E
Sbjct: 76  DGTHEGTEDGDVEFSDDDDVLEHDGSIDNEDDDGSEHVGSDNNEEHGSDEDSERGEAVEE 135

Query: 955 RD--EDRKP 961
            D  ED  P
Sbjct: 136 SDSSEDEVP 144


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,954,236
Number of Sequences: 28952
Number of extensions: 1068908
Number of successful extensions: 2521
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2517
Number of HSP's gapped (non-prelim): 16
length of query: 1098
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1009
effective length of database: 9,493,832
effective search space: 9579276488
effective search space used: 9579276488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)