GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001365-TA|BGIBMGA001365-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
         (1098 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    30   1.5  
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    28   8.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   8.2  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   8.2  

>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 934  DDTAEVHFSQESSKQDDVTPERDEDRKPVKVVLRSNLTFNIGDD----FFPWRPREDEKD 989
            DD  +V    E  ++D +T  +DED +     L  N   N  DD    F  +   E+ +D
Sbjct: 68   DDLPQVDVENEDEEEDSITSFQDEDDETSHQELSDNSEMNNRDDADDEFLGFSGPENLED 127

Query: 990  -DTASTKDAKAQQIQLI 1005
             D +S +D    + +++
Sbjct: 128  VDESSAEDVSGDEAEIM 144


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 232

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 1007 KPNPGIL--VDDQRPAADVRSDVTKTSNKRIDKHKDLSNYDRSRIRHVSGDGNID---QR 1061
            KPN   L  +DD     DV S       K ID+HK   N  +   R +  D N++   Q 
Sbjct: 21   KPNFDDLDDLDDILDDLDVPSAFKNEEKKNIDEHKQTGNTSKENER-IKNDDNLNSLIQE 79

Query: 1062 QEDSFED 1068
                FED
Sbjct: 80   MMSKFED 86


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 86  SEKKLAMNVHLSDRIAYNRTLKDYRNPACQRVVYDAELPSVSVILIFHNEPYSVVIRTIW 145
           +EK L MN  L D   + + LKD    +     Y  + PS S + + H    S+  R +W
Sbjct: 326 AEKSLQMN--LEDEQRFQQFLKD--EESIMSNWYPGQFPSASRLFLGHLNTKSLSKRNLW 381

Query: 146 SV 147
            V
Sbjct: 382 KV 383


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 926 DEGGADSGDDTAEVHFSQESSKQDDVTPERDED 958
           DE   +  ++ A+ +  +E  ++DD   E DED
Sbjct: 96  DEDNVEENEEEADANEEEEEDEEDDEEDEEDED 128


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,715,781
Number of Sequences: 5004
Number of extensions: 197073
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 4
length of query: 1098
length of database: 2,362,478
effective HSP length: 80
effective length of query: 1018
effective length of database: 1,962,158
effective search space: 1997476844
effective search space used: 1997476844
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)