Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001365-TA|BGIBMGA001365-PA|IPR001173|Glycosyl
transferase, family 2, IPR000772|Ricin B lectin, IPR008997|Ricin
B-related lectin
(1098 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346... 36 0.14
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 34 0.72
12_01_0810 + 7429834-7429960,7430534-7430696,7430796-7430844,743... 32 2.2
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 31 3.8
07_01_1089 + 10004773-10004831,10004924-10005033,10005631-100057... 31 3.8
01_01_0572 - 4244714-4245311,4245694-4245736,4246172-4246283,424... 31 3.8
12_02_0881 - 23970143-23970433,23970814-23971116,23971490-239720... 31 5.1
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 31 6.7
>04_04_0027 + 22232781-22233051,22234256-22234329,22234471-22234638,
22234812-22234971,22235062-22235145,22235781-22236078,
22236158-22236364,22236465-22236735,22236971-22237055,
22237141-22237182,22237302-22237350,22237825-22237894,
22238314-22238463,22238592-22238619,22238856-22238990,
22240693-22241469,22242133-22242192,22242367-22242413
Length = 991
Score = 36.3 bits (80), Expect = 0.14
Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 6/206 (2%)
Query: 870 SSAEDTPMLMGAERGADRKVNELLRDDSRE-----NWDVGESRFRRNNSXXXXXXXXXXX 924
S +D+ M+ RG V E +++D + + + N
Sbjct: 235 SEDDDSEMIYNQRRGKSSVVIEEIQEDDKPAAGGAQKGSNKKQTSENGDDSKLQLVVRTP 294
Query: 925 XDEGGADSGDDTAEVHFSQESSKQDDVTPERDEDRKPVKVVLRSNLTFNIGDDFFPWRPR 984
E +D V FS+ + D + ++ + R + +GD P
Sbjct: 295 PAESLESEDEDGFPVSFSESKKRTDGSSKKKGNLNNKMSTEDRKRKSSAVGDHHDPSGEV 354
Query: 985 EDEKDDTASTKDAKAQQIQLIIKPNPGILVDDQRPAADVRSDVTKTSNKRIDKHKDLSNY 1044
+DE D S K+ KA+ + + + + PA V + K NK + + ++
Sbjct: 355 KDENDGV-SKKNKKAKAKKTAVGGVEKEIKQEDSPADLVDAKQKKNKNKNTSEAEAGAHQ 413
Query: 1045 DRSRIRHVSGDGNIDQRQEDSFEDDN 1070
+ + +H+ D D QE S + N
Sbjct: 414 NTDKTKHIHTDAEEDTAQEASKKKKN 439
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 33.9 bits (74), Expect = 0.72
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 882 ERGADRKVNELLRDDSRENWDVGESRFRRNNSXXXXXXXXXXXXDEGGADSGDDTAEVHF 941
+RG DR E RD RE D + + R + G D GDD ++
Sbjct: 76 DRGKDRDRGEAERDKERERKDRDKEKSRGRDKSKEEREDKDYRDKSRGKDRGDDGGDLSK 135
Query: 942 SQESSKQDDVTPERDEDRKPVKVVLRSNL 970
+E ++ V +E KP LR +
Sbjct: 136 GEEGDQKKRV-EAAEEAEKPSTTELRERI 163
>12_01_0810 +
7429834-7429960,7430534-7430696,7430796-7430844,
7431203-7431385,7431824-7431898,7431963-7432148,
7432362-7432450,7432892-7433444
Length = 474
Score = 32.3 bits (70), Expect = 2.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 579 KYIPSTSQLQHVDSGLCLDAGFEVGADVTARACSGK 614
KY+ TS + V + +D EVGAD A C+GK
Sbjct: 160 KYLLGTSMARPVIAKAMVDVAKEVGADAVAHGCTGK 195
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 31.5 bits (68), Expect = 3.8
Identities = 51/208 (24%), Positives = 79/208 (37%), Gaps = 27/208 (12%)
Query: 868 PPSSAEDTPMLMGAERGADRKVNELLRDDS-RENWDVGESRFRRNNSXXXXXXXXXXXXD 926
P AED G G +R V R D+ + S R + S
Sbjct: 497 PLRMAEDEDTFQGMHDGMERDVQHSYRGDALTRHRRTRNSDVRYSRSPESERIKLGRHPV 556
Query: 927 EGGADSGDDTAEVHFSQESSKQDDVTPERDEDRKPVKVVLRSNLTFNIGDDFFPWRPRED 986
+ G S DDT E FS + +V+P R P K + R ++T + D P +
Sbjct: 557 QHGYSSFDDTHE--FSDQ-----EVSPVVSRGR-PRKAMYRDHVTEHYQTDDSPLG--RE 606
Query: 987 EKDDTASTKDAKAQQIQLIIKPNPGILVDDQRPAADVRSDVTKTSNKRIDKHKDLSNYDR 1046
DD + D Q++ P +VDDQ D R D+ N + R
Sbjct: 607 YYDDDVDSYDLSPQRMA-----EPYDMVDDQ-DKYDARYDLPNNRNV----------FSR 650
Query: 1047 SRIRHVSGDGNIDQRQEDSFEDDNVLRG 1074
+R + DG D+ QE++ + +++ G
Sbjct: 651 ITLRDDNNDGWADEDQENNHQSNSITYG 678
>07_01_1089 + 10004773-10004831,10004924-10005033,10005631-10005749,
10005833-10005930,10006834-10006921,10006993-10007127,
10007211-10007313,10007506-10007618,10007821-10007868
Length = 290
Score = 31.5 bits (68), Expect = 3.8
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 947 KQDDVTPERDEDRKPVKVVLRSNLTFNIGD-DFFPWRPREDEKDDTASTKDAKAQQIQLI 1005
++DDV P +E+ + V+ V + ++ D + F P +DE DD D + + L+
Sbjct: 191 EKDDVAPTEEEEEEEVEYVEGDDEMDDMEDIEDFGGLPDDDEDDD----NDGETDEDDLL 246
Query: 1006 IKPNPGILVDDQRPAADVRSDVTKTSNK---RIDKHKDLSNYDRSRI 1049
+P + + +D+RS++ K S K +++ D+ R+R+
Sbjct: 247 DEP---VAKKPKGRGSDLRSNIGKKSKKLITEVERDDDMGIRRRTRM 290
>01_01_0572 - 4244714-4245311,4245694-4245736,4246172-4246283,
4246462-4246551,4246625-4246787,4246909-4247015,
4247149-4247230,4247314-4247351,4247434-4247542,
4248031-4248095,4248358-4248468,4248610-4248747
Length = 551
Score = 31.5 bits (68), Expect = 3.8
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 928 GGADSGDDTAEVHFSQESSKQDDVTPERDEDRKPVKVVLRSNLTFNIGDDFFPWRPREDE 987
GG+D G + E QE + DV PE+D+D V +L+ + +D + ++D+
Sbjct: 380 GGSDIGPEQKED--GQEDAGGSDVNPEQDKDGGQEDVESLDDLSSDEDED-RDYNGKDDD 436
Query: 988 KDDTASTKDAKAQQIQLIIKPNPGILVDDQRPAADVRSDVTKTSNKRIDK 1037
+ D + PN G D + V T+ +++R DK
Sbjct: 437 SSGSDGENDVGSDGENDAYDPNKG---DTEEEEVFVPRKRTRLASRRFDK 483
>12_02_0881 -
23970143-23970433,23970814-23971116,23971490-23972077,
23972606-23972761,23972852-23972910,23974294-23974561
Length = 554
Score = 31.1 bits (67), Expect = 5.1
Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 16/196 (8%)
Query: 294 DTQGLMKARLAGARVAR---GDVLVFLDAHCETGADWLRPLLQRITHKRDSVLTPLIDVV 350
+TQ +++R G +AR GD A + G+ +L I + L VV
Sbjct: 307 ETQHTVRSRFHGNHLARNSAGDSPRVFAAKLQAGSPTYTSVLNHIRIYLPELFPNLNKVV 366
Query: 351 ---DQSSFKLEAAEYFQVVRGFKVGGFTFT--GHFTWIDVPEREKKRRGSD--IAPTWSP 403
D + + + + + G KV G T G TW+ S IA + P
Sbjct: 367 FLDDDVVVQRDLSSLWDIDLGGKVNGAVETCRGGDTWVMSKRFRNYFNFSHPLIANNFDP 426
Query: 404 TMAGGLFAIN--RAYFWELGAYDEQMAGWGGENLEMSFRIWQCGGTLETVPCSRVGHVF- 460
+ + +N W + ++ W ENL +F +W+ GTL + GHV
Sbjct: 427 SECAWAYGMNIFDLSAWRKTSIKDKYHHWVRENLSSNFTLWRL-GTLPPGLIAFRGHVHP 485
Query: 461 --RSFHPYGLPAQSDT 474
S+H GL Q T
Sbjct: 486 IDPSWHLLGLGYQEKT 501
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 30.7 bits (66), Expect = 6.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 729 RDLVAILNDKDVKRGGVTVLRDAEIKK 755
R+++AI D D RGG+T L DA KK
Sbjct: 171 REVIAIYVDDDYGRGGITALGDALAKK 197
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,591,315
Number of Sequences: 37544
Number of extensions: 1370085
Number of successful extensions: 3045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3038
Number of HSP's gapped (non-prelim): 13
length of query: 1098
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1008
effective length of database: 11,414,388
effective search space: 11505703104
effective search space used: 11505703104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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