GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001364-TA|BGIBMGA001364-PA|IPR007234|Vps53-like,
N-terminal
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...   154   5e-38
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   3.4  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    28   4.4  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   5.9  
SPBC119.18 |||mitochondrial distribution and morphology protein ...    28   5.9  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   7.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   7.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   7.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   7.8  

>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score =  154 bits (373), Expect = 5e-38
 Identities = 105/395 (26%), Positives = 183/395 (46%), Gaps = 37/395 (9%)

Query: 105 IAELALQVADINKKAERSESMVREITCEIKQLDCAKCNLTAAITALNHLHMLAGGVDTLT 164
           I  L  +++ +   AE ++S + ++T EIK LD AK NL  ++T L  L ML    + L 
Sbjct: 81  IVSLLQELSTLQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLR 140

Query: 165 TMTKNRQYKEIALPMQAIMEVLQHFECYRDIRELSVLRDQVHSIRHDLGNQILADFKQAF 224
           T+ +N+++ E    MQA +++L  F+ YR +  ++ L   +   +     Q+   F+  F
Sbjct: 141 TLRQNQKFGEAISLMQATLQLLNFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQF 200

Query: 225 ---TG--GSKSNITHRTLSEACGVVDILDPKVKQDLLKWFISMQLQEYQHLYSSEQECAW 279
              +G  G  S  + + L+E C  +DI      + +++W+   QL+++  ++   +E   
Sbjct: 201 KKESGMRGGFSPSSVQYLNELCRFIDIFAGDPPESVIRWYCRHQLEDFMKVFRENEEAGS 260

Query: 280 LTHIERRYAWLKKHLLTFEDTLGNIFPYQWALSENIARQFCKITSTELSNLMAARRNELD 339
           L ++ RRY W KK L T++     IFP  W +   +   FC+ T  +LS L+  + + L 
Sbjct: 261 LENLPRRYTWFKKLLQTYDQLHKPIFPPHWKVDFRLYEVFCEETKNDLSKLL--KDDRLS 318

Query: 340 VKLLLYAIQNTYNFELLLHKRFTGTDLKPDNVDTNSKQPFDNETKDNTADSDGQQAEGSS 399
           +++ + +++ T  FE  +  RF          +T S+   + E K+  A           
Sbjct: 319 LQVFVASLEQTLEFESFIDHRF---------YNTKSRFNSNFEPKERQA----------- 358

Query: 400 SSWVGLIGSCFEPXXXXXXXXXXXXXXXXXERFVQDAKTSPSEANMTASGEGAVISSCAD 459
                 + S FEP                 E F  + +TS  E++        V+SS   
Sbjct: 359 ---YNALSSVFEPHYTLYFNQQSQEFSILFENFALEKQTSTDESSQ-------VLSSSIK 408

Query: 460 LFLFYKKCLVQCARLTTGEPMLELAGVFQKYLREY 494
           LF  Y+K L Q  RLT   P++ L  +F K+LR Y
Sbjct: 409 LFQAYRKTLTQFVRLTRSSPLVGLKNLFIKWLRRY 443



 Score =  107 bits (257), Expect = 6e-24
 Identities = 67/243 (27%), Positives = 118/243 (48%), Gaps = 6/243 (2%)

Query: 554 ITTSEYCLETTIHLEQKLKEKVSPKLSDKIDLTPEQDLFHKIISNCIQMLVQDLETACEP 613
           + T+EY   TTI LE++ +E  + +  DK+  +   ++        ++      E     
Sbjct: 464 LNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLEVISSSRGTLLKFATGKFENVLNS 523

Query: 614 ALQSMTKISWLSFDNVGDQSSYVTQIIMHLKNTVPNLRDNLSSSRKYFTQFCIRFANSFI 673
            L+ ++K+   + + VGDQSSYV   + ++         ++     +   FC R   SF 
Sbjct: 524 DLEPLSKMDLKNIETVGDQSSYVGGAVQNMTAKASEFL-SVVDLNMFARNFCDRSCESFT 582

Query: 674 PKFIQNVYKCKPISTVGSEQLLLDTHMLKTALLELPSIGSEVKRAAPATYTKVVLKLMTK 733
            +F+  +Y  KPIS VG+EQLLLD +  K ALL+LP +  +   +   +Y   +   M  
Sbjct: 583 RQFLNAIYLAKPISEVGAEQLLLDLYSFKNALLKLPDLKQDY--SITDSYINHLTIFMGY 640

Query: 734 AEMVLKLVMAPLEGNLEGFVTQFVKLLPDCSLAEFHKVLDMKGAKLSKTQMSNLDAVFKN 793
            E VLK ++ P      GF+  ++ L+ D S+  F  +L++KG  + K+ +S+    F +
Sbjct: 641 IETVLKTLLTPASPK-AGFIQSYIFLVKDRSVTNFTVLLELKG--VGKSDISSFLQQFSD 697

Query: 794 ACK 796
             K
Sbjct: 698 FVK 700


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 525  VTNLHTLLRDEAGNVSRYTKQEISKITSVITTSEYCLETTIHLEQKLKEKVSPKLSDKID 584
            V+N++  L  E     RY    +S + ++ TT  + L       + L + V P LS    
Sbjct: 1102 VSNVNGKLNSENVAALRYADDTMSFLVTLQTTYSFELTLNYDFSELLTKVVFPFLSPVDT 1161

Query: 585  LTPEQ---DLFHKI 595
            +T EQ   DL H I
Sbjct: 1162 ITAEQEMRDLLHNI 1175



 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 301  LGNIFPYQWALSENIARQFCKITSTELSNLMAARRNELDVKLLLYAIQNTYNFELLLHKR 360
            L  +FP  +   +    +   +     S  +AA R   D    L  +Q TY+FEL L+  
Sbjct: 1084 LSEVFPSLFHAIQATLEKVSNVNGKLNSENVAALRYADDTMSFLVTLQTTYSFELTLNYD 1143

Query: 361  FT 362
            F+
Sbjct: 1144 FS 1145


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 524 IVTNLHTLLRDEAGNVSRYTKQEISKITSVITTSEYCLETTIHLEQKLKEKVSPKLSDKI 583
           IV  +    +DE+    + T + + K+   +  SE        ++++L+E +   L   +
Sbjct: 733 IVERVVNNFKDESEPYRKMTAETVDKVIGSLGVSE--------IDERLEELL---LDGVL 781

Query: 584 DLTPEQDLFHKIISNCIQMLVQDLETACEPAL 615
               EQ +  K+I  C   +V  L T C+P L
Sbjct: 782 FAFQEQSVEEKVILTCFSTVVNALGTRCKPYL 813


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 320 CKITSTELSNLMAARRNELDVKLLLYAIQN 349
           C I S E +NL+   R  L  KLLL  +QN
Sbjct: 180 CAINSKEDNNLVTEDRVNLGAKLLLVPVQN 209


>SPBC119.18 |||mitochondrial distribution and morphology protein
           Mdm35 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 69

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 457 CADLFLFYKKCLVQCARLTTGEPMLELA 484
           C +LF  YK CL++  +    +P+LE A
Sbjct: 38  CDELFAEYKSCLLKALKTKKIDPLLEAA 65


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 116 NKKAERSESMVREITCEIKQLDCAKCNLTAAITALNHLHMLAGGVDTLTTMTKNRQYKEI 175
           +K +E SES+ R I    +      C   + +  LNH+H+L G  +     +  ++  E+
Sbjct: 17  SKISEISESVGRAIRYCKEDGKVEGCETASHVDFLNHIHLLLGNYNNDLASSIEKKKSEL 76

Query: 176 ALPMQAIMEVLQ-HFECYRD--IRELSVLRDQVHSIRHDLGN--QILADFKQAFTGGSK 229
            +     + V+  H E  +D  I   SV   ++ S+  D  +  + L  FK    GG++
Sbjct: 77  IVRNSEGLPVMDIHEEVDKDGNIISASVAPQRISSV-IDYADVFRSLPGFKNIENGGNR 134


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 292  KHLLTFEDTLGNIFPYQWALSENIARQFCKIT 323
            K++    D +   FPY + L +N+ R+F  I+
Sbjct: 2112 KNIYVNSDNISETFPYTYILPQNLLRKFVTIS 2143


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 11/191 (5%)

Query: 532 LRDEAGNVSRYTKQEISKITSVITTSEYCLETTIHLEQKLKEKVSPKLSDKIDLTPEQDL 591
           L  +A N S  T     ++TS    +      T  ++      + P +S K+D   ++ L
Sbjct: 20  LHKKANNSSSSTTGAFPQLTSFTKPT-----ATNGVDSPTSSHIDPSVSAKLD--SQRKL 72

Query: 592 FHKIISNCIQMLVQDLETACEPALQSMTKISWLSFDNVGDQSSYVTQIIMHLKNTVPNLR 651
             K  +    +      T+  P + S T  +  +  + G    Y   ++ +  ++  ++ 
Sbjct: 73  SLKSGNMWDSLNAPSELTSKNPTVSSTTSSANPAIVSNGGSPFYKNPVVANNPSSTFDMS 132

Query: 652 DNLSSSRKYFTQFCIRFANSFI-PKFIQNVYKCKPISTVGSEQLLLDT---HMLKTALLE 707
            NL +S+   T F   F+N  I P F+++ +      T G+    L +   H+ +  L  
Sbjct: 133 TNLFNSKNANTSFTNAFSNEGISPGFLRDCFPSSNSITTGTASPKLGSPFNHINRPVLDR 192

Query: 708 LPSIGSEVKRA 718
            PS  S+ + A
Sbjct: 193 SPSSFSQSRSA 203


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 101  AQRCIAELALQVADINKKA----ERSESMVREITCEIKQLDCAKCNLTAAITALNHL 153
            A+ CI E      D+++K     E   SM+ EI     Q+D  KC +  +I  +  L
Sbjct: 3341 AEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQMDEVKCKMQRSIEVITDL 3397


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,473
Number of Sequences: 5004
Number of extensions: 132756
Number of successful extensions: 417
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 12
length of query: 801
length of database: 2,362,478
effective HSP length: 78
effective length of query: 723
effective length of database: 1,972,166
effective search space: 1425876018
effective search space used: 1425876018
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)