Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001364-TA|BGIBMGA001364-PA|IPR007234|Vps53-like,
N-terminal
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439... 347 3e-95
08_02_0172 - 13733527-13733614,13733700-13733749,13733823-137339... 37 0.073
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045 33 1.2
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 32 1.6
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509... 32 2.1
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 31 4.8
07_01_0328 - 2291696-2291951,2292462-2293708 30 8.4
>01_06_1723 -
39443176-39443505,39443615-39443710,39443834-39443902,
39444381-39444443,39444521-39444598,39444725-39444838,
39445727-39445804,39446457-39446522,39446739-39446804,
39446896-39447003,39447355-39447432,39447951-39448010,
39448087-39448191,39448407-39448595,39448922-39448985,
39449244-39449385,39449494-39449654,39449952-39450076,
39450230-39450300,39450410-39450560,39450713-39450769,
39451049-39451143,39451331-39451379
Length = 804
Score = 347 bits (852), Expect = 3e-95
Identities = 242/754 (32%), Positives = 388/754 (51%), Gaps = 63/754 (8%)
Query: 41 DDFDAVAYINRVFPTEQSLSGVESAVARCEFRLSGVEQDIRRLVXXXXXXXXXXXXXLTE 100
D A+ YIN++FPTE SLSGVE + + + + V+ I V L
Sbjct: 2 DKSSALEYINQMFPTEASLSGVEPLMQKIQSEIRRVDASILAAVRQQSNSGTKAKEELAA 61
Query: 101 AQRCIAELALQVADINKKAERSESMVREITCEIKQLDCAKCNLTAAITALNHLHMLAGGV 160
A + EL ++ +I KAE+SESMV+EI +IK+LDCAK ++T ITAL+ L ML V
Sbjct: 62 ATNAVQELMHKIHEIKTKAEQSESMVQEICRDIKKLDCAKRHITTTITALHRLTMLVSAV 121
Query: 161 DTLTTMTKNRQYKEIALPMQAIMEVLQHFECYRDIRELSVLRDQVHSIRHDLGNQILADF 220
+ L M RQYKE A ++A+ ++ HFE YRD+ +++ LR++ +I+ L + + +DF
Sbjct: 122 EQLQVMASKRQYKEAAAQLEAVNQLCSHFEAYRDVPKITELREKFKNIKKILKSHVFSDF 181
Query: 221 KQAFTGGSKSNITH-RTLSEACGVVDILDPKVKQDLLKWFISMQLQEYQHLYSSEQECAW 279
TG + T + LS+AC VVD L+P V+++L+K F S +L Y+ ++ E A
Sbjct: 182 TSLGTGKETEDATLLQQLSDACLVVDALEPSVREELVKNFCSKELTSYKQIFEGA-ELAK 240
Query: 280 LTHIERRYAWLKKHLLTFEDTLGNIFPYQWALSENIARQFCKITSTELSNLMAARRNELD 339
L ERRYAW+K+ L + EDT IFP W + + QFCKIT +L +++ + + D
Sbjct: 241 LDKTERRYAWIKRRLRSNEDTW-KIFPPSWHVDYLLCIQFCKITRAQLIDILNNLKEKPD 299
Query: 340 VKLLLYAIQNTYNFELLLHKRFTGTDLKPDNVDTNSKQPFDNETKDNTADSDGQQA---- 395
V LL A+Q T FE L ++F+G N ++ S + +T N SD ++
Sbjct: 300 VATLLLALQRTLEFEEELAEKFSGGVTTTRNKESASDDE-NEDTGRNKIVSDIRKKYEKK 358
Query: 396 ------EGSSSSWVGLIGSCFEPXXXXXXXXXXXXXXXXXERFVQDAKTSPSEANMTASG 449
E ++ G+I SCFEP ++ +Q+ K E + T
Sbjct: 359 LAVPNDEIGHFNFHGIISSCFEPYMSVYIELEEKSLVDQLDKLIQEEKWETEEGSQTY-- 416
Query: 450 EGAVISSCADLFLFYKKCLVQCARLTTGEPMLELAGVFQKYLREYASSVLQAALPRTNPT 509
++SS +FL ++ L +C+ LT E + L VFQ+ L+ YAS L A LP+
Sbjct: 417 ---ILSSSMQVFLIIRRSLNRCSALTKNETLFNLFQVFQRVLKAYASK-LYARLPK---- 468
Query: 510 XXXXXXXXGNTVPSIVTNLHTLLRDEAGNVSRYTKQEISKITSVITTSEYCLETTIHLEQ 569
G + + T G + R + ++ I ++ T+EYC +T L
Sbjct: 469 -------GGTGIVAAATGTD-------GQI-RTSDRDEKMICYIVNTAEYCHQTNAIL-- 511
Query: 570 KLKEKVSPKLSDKIDLTPEQDLFHKIISNCIQMLVQDLETACEPALQSMTKISWLSFDNV 629
LSD ++ + K++ + L +++ P IS + D++
Sbjct: 512 ---------LSDS-NMNEFNNA--KLLMHMSGELAENVAKMINPHFADKVDISEVQ-DSL 558
Query: 630 GDQSSYVTQIIMHLKNTVPNLRDNLSSSRKYFTQFCIRFANSFIPKFIQNVYKCKPISTV 689
+ YV + L +++P L + LS + YF F + A S P+F N+YKCK IS
Sbjct: 559 F-HARYVNGVSSILSSSIPVLGNLLSPT--YFQYFLDKLAASLGPRFYLNIYKCKHISET 615
Query: 690 GSEQLLLDTHMLKTALLELPSIGSEVKRAAPATYTKVVLKLMTKAEMVLKLVMAPLEGNL 749
G++Q+LLDT +KT LL++PS+G + A A+Y+K V + M+KAE +LK++++P +
Sbjct: 616 GAQQMLLDTQAVKTILLDIPSLGKQ--STAAASYSKFVSREMSKAEALLKVILSP----V 669
Query: 750 EGFVTQFVKLLPDCSLAEFHKVLDMKGAKLSKTQ 783
+ + LLP+ + EF ++LD+KG K + Q
Sbjct: 670 DSVANTYRALLPEGTPLEFQRILDLKGLKKADQQ 703
>08_02_0172 -
13733527-13733614,13733700-13733749,13733823-13733918,
13734082-13734156,13735026-13735127,13735542-13735619,
13735704-13735899,13736445-13736530,13737803-13737994,
13740068-13740175,13740256-13740368,13740655-13740721
Length = 416
Score = 36.7 bits (81), Expect = 0.073
Identities = 28/173 (16%), Positives = 74/173 (42%), Gaps = 4/173 (2%)
Query: 542 YTKQEISKITSVITTSEYCLETTIHLEQKLKEKVSPKLSDKIDLTPEQDLFHKIISNCIQ 601
Y + ++ S LE H+ Q + + + + + + ++ +C++
Sbjct: 182 YLADSVERLGESFINSSTMLENKNHIHQGRHTRSTSAIPKSLASLANE--YRRLAIDCVR 239
Query: 602 MLVQDLETACEPALQSMTKISWLSFDNVGDQSSYVTQIIMHLKNTVPNLRDNLSSSRKYF 661
+L +++ +Q MTK ++ + D ++ + + + ++ S++ +
Sbjct: 240 VLRLEMQLETIYHMQEMTKREYVEDQDAEDPDDFIISLTTQIARRDEEMAPYIAESKRNY 299
Query: 662 TQFCIRFANSFIPKFIQNVYKCKPISTVGSEQLLLDTHMLKTALLELPSIGSE 714
I ++ I+ + + K I+ +G +Q+ ++ L+ AL +PSI SE
Sbjct: 300 VFGGI--SSVAANASIKALAQMKSINLLGVQQICRNSIALEQALAAIPSIDSE 350
>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
Length = 1294
Score = 32.7 bits (71), Expect = 1.2
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 608 ETACEPALQSMTKISWLSFDNVGDQSSYVTQIIMHLKNTVPN------LRDNLSSSRKYF 661
+ CE ++ K+ W+ + D +S ++I+ PN L+ +L KY
Sbjct: 257 QRVCEEMVRKNFKVIWVCVSDRFDVTSVTSKILESATGAKPNANCLETLQQSLIHKLKYS 316
Query: 662 TQFCIRFANSFIPKFIQNVYKC-KPISTVGS-EQLLLDTHMLKTALLELPSIGSEVK 716
T F + + + K I K P+ T S ++LL T M A+L ++G E +
Sbjct: 317 TDFLLVLDDVWEDKKIDKWEKLFAPLRTGKSGSKILLTTRMQSVAVLATEAMGIETE 373
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 32.3 bits (70), Expect = 1.6
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 9/117 (7%)
Query: 160 VDTLTTMTKNRQYKEIALPMQAIMEVLQHFE---CYRDIRELSVLRDQVHSIRHDLGNQI 216
V T+ M + + Y+ L ++ I + C R V+ D+V H L I
Sbjct: 156 VPTILLMMQRKLYEREGLKIEGIFRINAENSQEICVRKQLNSGVVPDEVDL--HCLAGLI 213
Query: 217 LADFKQAFTGGSKS----NITHRTLSEACGVVDILDPKVKQDLLKWFISMQLQEYQH 269
A F++ TG S + H E C ++ + P V+ LL W I++ +H
Sbjct: 214 KAWFRELPTGVLDSLTPEQVMHCNTEEDCALLASMLPPVEAALLDWAINLMADVVEH 270
>05_04_0176 +
18749945-18749969,18750186-18750751,18750876-18750944,
18752128-18752325,18752791-18752922,18753658-18753744,
18753845-18754288,18754644-18754811,18755129-18755359,
18755893-18756008,18756125-18756407
Length = 772
Score = 31.9 bits (69), Expect = 2.1
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 574 KVSPKLSDKIDLTPEQDLFHKIISNCIQMLVQDLETACEPALQS-MTKISWLSFDNVGDQ 632
K + KLS K+D +QD IS LV +ET +P + KI WL V +
Sbjct: 699 KAAEKLSSKVDEAIQQD-----ISRSANQLVHFVETVSKPYQDACQQKIDWL--QGVQGE 751
Query: 633 SSYVTQIIMHLKNTVPNLRDN 653
S V + + LK + NL ++
Sbjct: 752 LSTVERKLQTLKVEIQNLHES 772
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 30.7 bits (66), Expect = 4.8
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 532 LRDEAGNVS---RYTKQEISKITSVITTSEYCLETTIHLEQKLKEKVSPKLSDKIDLTPE 588
LRDE ++ + EI + S I+ + T+ Q+ E+VS S + L PE
Sbjct: 413 LRDEINSLKDSKNELQNEIQSLRSTISQLNTEKDATLFQHQQSVERVSDLESQLLKLQPE 472
Query: 589 QDLFHKIISNCIQMLVQDLE 608
+ I +QML+QDLE
Sbjct: 473 LE----EIEQKVQMLMQDLE 488
>07_01_0328 - 2291696-2291951,2292462-2293708
Length = 500
Score = 29.9 bits (64), Expect = 8.4
Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 98 LTEAQRCIAELALQVADINKKAERSESMVREITCEIKQLDCAKCNLTAAITALNHLHMLA 157
+TE ++ + L ++ D+ K + + + E+ +I + + T M+
Sbjct: 304 VTELEQLVRSLEKRLEDVEAKWD-ANLRIAELRADIAEKRADQLEKLLEKTVEGMERMVN 362
Query: 158 GGVDTLTTMTKNRQYKEIALPMQAIMEVLQHFECYRDIRELSVLRDQVHSIRHDLGNQIL 217
++ T + +++ L +L H C + +E++ +D++HS+R + + IL
Sbjct: 363 NKMEQTITWVLQKNFQQEELAHSRHSSLLLH--CTQLAQEMAATKDELHSVRRNYRDDIL 420
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.131 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,344,107
Number of Sequences: 37544
Number of extensions: 771172
Number of successful extensions: 1993
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1983
Number of HSP's gapped (non-prelim): 8
length of query: 801
length of database: 14,793,348
effective HSP length: 88
effective length of query: 713
effective length of database: 11,489,476
effective search space: 8191996388
effective search space used: 8191996388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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