GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001364-TA|BGIBMGA001364-PA|IPR007234|Vps53-like,
N-terminal
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42410| Best HMM Match : Vps53_N (HMM E-Value=0)                    406   e-113
SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)               34   0.39 
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 33   1.2  
SB_1479| Best HMM Match : OTU (HMM E-Value=0.34)                       32   2.1  
SB_12769| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00026)         31   2.8  
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)                      31   3.6  
SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   6.4  
SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   6.4  
SB_59327| Best HMM Match : DUF919 (HMM E-Value=6.3)                    30   6.4  
SB_19926| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   8.4  

>SB_42410| Best HMM Match : Vps53_N (HMM E-Value=0)
          Length = 624

 Score =  406 bits (1000), Expect = e-113
 Identities = 228/513 (44%), Positives = 317/513 (61%), Gaps = 52/513 (10%)

Query: 264 LQEYQHLYSSEQ-ECAWLTHIERRYAWLKKHLLTFEDTLGNIFPYQWALSENIARQFCKI 322
           LQ+++   S +  + AWL  I+RR+AWLK+ L+ FE+     FP +W + EN++ +FCK 
Sbjct: 141 LQDFEESLSVKGVKVAWLDKIDRRFAWLKRALVKFEEDFAGTFPPEWRVEENVSEEFCKT 200

Query: 323 TSTELSNLMAARRNELDVKLLLYAIQNTYNFELLLHKRFTGTDLKPDNVDTNSKQPFDNE 382
           T  ELS +M+AR  E++VKLLL+AIQ T  FE LL +RF  T L+ +N+  + K P    
Sbjct: 201 TKKELSKIMSARAPEIEVKLLLFAIQRTTTFENLLVQRFAYT-LEEENLSKDPKLP---- 255

Query: 383 TKDNTADSDGQQAEGSSSSWVGLIGSCFEPXXXXXXXXXXXXXXXXXERFVQDAKTSPSE 442
                       A   SS ++G+I  CFEP                 +RFVQD K S + 
Sbjct: 256 ------------ANPKSSKFLGMISRCFEPHLHIYIDSQDRNLSELMDRFVQDFK-SQTV 302

Query: 443 ANMTASGEGAVISSCADLFLFYKKCLVQCARLTTGEPMLELAGVFQKYLREYASSVLQAA 502
                 G   V  S  +LF+FYKKC+VQC++L+TG P+L L   FQKYL+E+A+ VL   
Sbjct: 303 PQPEGDGSNVVFPSAGELFVFYKKCMVQCSQLSTGPPLLSLTATFQKYLKEFANRVLSNH 362

Query: 503 LPRTNPTXXXXXXXXGNTVPSIVTNLHTLLRDEAGNVSRYTKQEISKITSVITTSEYCLE 562
           LP             G+        L ++L+D A +V +++ +E S    ++ T++YCLE
Sbjct: 363 LP-----------VKGSG------GLASILKD-ASDV-KFSAEEKSLTCCILCTADYCLE 403

Query: 563 TTIHLEQKLKEKVSPKLSDKIDLTPEQDLFHKIISNCIQMLVQDLETACEPALQSMTKIS 622
           TT  + Q                TP     ++++SNCIQ+LVQDLE AC+  L +M K+ 
Sbjct: 404 TTQQVAQYYTTGTP---------TPH----NRVVSNCIQLLVQDLENACDAPLTAMVKVH 450

Query: 623 WLSFDNVGDQSSYVTQIIMHLKNTVPNLRDNLSSSRKYFTQFCIRFANSFIPKFIQNVYK 682
           W S + VGD+S+YVT I  HLK+TVP LRD L S+RKYFTQFC++FANSFIP++I N+Y+
Sbjct: 451 WQSVEAVGDESAYVTAISNHLKDTVPLLRDFLCSARKYFTQFCVKFANSFIPRYINNLYR 510

Query: 683 CKPISTVGSEQLLLDTHMLKTALLELPSIGSEVKRAAPATYTKVVLKLMTKAEMVLKLVM 742
           CKPISTVG+EQ  LDTH LKT LL+LPSIGS+V+R  PA++TKVV K M+KAEM+LK+VM
Sbjct: 511 CKPISTVGAEQFFLDTHSLKTILLDLPSIGSKVQRKPPASFTKVVAKGMSKAEMILKVVM 570

Query: 743 APLEGNLEGFVTQFVKLLPDCSLAEFHKVLDMK 775
           +P +  + GFV  ++KLL D   + F K+LDMK
Sbjct: 571 SPHDPAV-GFVDNYIKLLADTDTSNFQKLLDMK 602



 Score =  140 bits (339), Expect = 4e-33
 Identities = 67/128 (52%), Positives = 95/128 (74%)

Query: 98  LTEAQRCIAELALQVADINKKAERSESMVREITCEIKQLDCAKCNLTAAITALNHLHMLA 157
           L EAQ+ I +L  ++ DI +KA++SE MV+EIT +IKQLD AK +LT +IT LNHLHML 
Sbjct: 22  LEEAQQAIQQLFAKIIDIKEKADKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLV 81

Query: 158 GGVDTLTTMTKNRQYKEIALPMQAIMEVLQHFECYRDIRELSVLRDQVHSIRHDLGNQIL 217
           GGVDTLTT+ K RQY E+A  +Q ++ VL+HF+ Y  I ++  L D+V+ I+ +LG QIL
Sbjct: 82  GGVDTLTTLAKKRQYGEVANLLQGVVNVLEHFKKYFSISQIRQLADRVNKIQGELGTQIL 141

Query: 218 ADFKQAFT 225
            DF+++ +
Sbjct: 142 QDFEESLS 149


>SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)
          Length = 824

 Score = 34.3 bits (75), Expect = 0.39
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 18  INFPSSVMSRIEELMGGTEQFDSDDFDAVA-YINRVFPTEQSLSGVESAVARCEFRLSGV 76
           +N  + + + ++E  G   +      + VA Y +R+    Q+L G  +   R   RL  +
Sbjct: 59  VNMVNELTAMVKEQRGRLTELSRGKQEVVAEYKDRI----QTLEGQLNDARRQLNRLETL 114

Query: 77  EQDIRRLVXXXXXXXXXXXXXLTEAQRCIAELALQVADINKKAERSESMVREITCEIKQL 136
           EQD  +L               TE +    ELA Q A +     R ES +  +T E+ Q+
Sbjct: 115 EQDKSKLAAQIRAQESVIEGLRTERKLWSQELAQQGASLASDRGRLESRIEVLTAELNQM 174


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 489 KYLREYASSVLQAALPRTNPTXXXXXXXXGNTVPSIVTNLHTLLRDEAGNVSRYTKQEIS 548
           K  R  +    Q   P+T+P          +   S+  +L T L+      S  T  + S
Sbjct: 126 KTSRRTSLKTSQKTSPKTSPKTSLKTSLKTSLKTSLKASLKTSLKTSL-KTSMKTSLKTS 184

Query: 549 KITSVITTSEYCLETTIHLEQKLKEKVSPKLSDKI 583
           + TS+ T  +  LET++       +K SP+ S +I
Sbjct: 185 RRTSLKTCPKTSLETSMKTRLNTSQKTSPETSPEI 219


>SB_1479| Best HMM Match : OTU (HMM E-Value=0.34)
          Length = 554

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 712 GSEVKRAAPATYTKVVLKLMTKAEMVLKLVMAPLEGNLEGFVTQFVKLLPDCSLAEFHKV 771
           G E+       YT ++ + + KA +  KL ++   G ++GF+    +   D  LAE   V
Sbjct: 222 GGEIAVGRNEIYTDIIDRGLRKAGIARKLGISEKGGAVKGFLEDLFQ--GDARLAELQYV 279

Query: 772 LDMKGAK 778
           LD+K  K
Sbjct: 280 LDLKQGK 286



 Score = 31.9 bits (69), Expect = 2.1
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 712 GSEVKRAAPATYTKVVLKLMTKAEMVLKLVMAPLEGNLEGFVTQFVKLLPDCSLAEFHKV 771
           G E+       YT ++ + + KA +  KL ++   G ++GF+    +   D  LAE   V
Sbjct: 354 GGEIAVGRNEIYTDIIDRGLRKAGIARKLGISEKGGAVKGFLEDLFQ--GDARLAELQYV 411

Query: 772 LDMKGAK 778
           LD+K  K
Sbjct: 412 LDLKQGK 418


>SB_12769| Best HMM Match : Peptidase_A17 (HMM E-Value=0.00026)
          Length = 352

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 542 YTKQEISKITSVITTSEYCLETTIHLEQKLKEKVSPKLSDKIDL 585
           YT+ EI  IT  I TS+ C   T H+ +  +E +  K++ K+D+
Sbjct: 32  YTRVEIPAITREIPTSDTCRRWT-HISRIAREMLPLKINAKVDI 74


>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
          Length = 1936

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 320 CKITSTELSNLMAARRNE-LDVKLLLYAIQNTYNFELLLHKRFTGTDLKPDNVDTNSKQP 378
           C +  TE++ ++    +  +DVK     I +T  FE        G D++ D  D   ++ 
Sbjct: 246 CILNDTEVTKIVTVTNHSPMDVKYQWCFIDSTVGFENKDEDEGIGGDVEDDVQDQAVEEE 305

Query: 379 FDNETKDNTADSDGQQAEGS 398
              E +D+   S    +EGS
Sbjct: 306 AAEEDRDSAGGSPAPSSEGS 325


>SB_49821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 249 PKVKQDLLKWFISMQ-LQEYQHLYSSEQECAW-LTHIERRYAWLKKHLLTFED 299
           P+ K++L+ +   M  L  Y   +SS  E  W LTH + R+ W  +    FED
Sbjct: 464 PQSKEELVSFLQMMAYLSRYITNFSSRCEPLWRLTHKDARFEWNDEQQKAFED 516


>SB_29028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 714

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 360 RFTGTDLKPDNVDTNSKQPFDNETKDNTADSDGQQAEGSSSSWV 403
           R + T L+P N  T  KQ F NET+  T + +  ++  S+S  V
Sbjct: 267 RDSSTILQPQNSTTIMKQKFSNETEVKTKEGEKSRSISSASRCV 310


>SB_59327| Best HMM Match : DUF919 (HMM E-Value=6.3)
          Length = 293

 Score = 30.3 bits (65), Expect = 6.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 360 RFTGTDLKPDNVDTNSKQPFDNETKDNTADSDGQQAEGSSSSWV 403
           R + T L+P N  T  KQ F NET+  T + +  ++  S+S  V
Sbjct: 148 RDSSTILQPQNSTTIMKQKFSNETEVKTKEGEKSRSISSASRCV 191


>SB_19926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 520 TVPSIVTNLHTLLRDEAGNVSRYTKQ--EISKITSVITTSEYCLETTIHLEQKLKEKVSP 577
           T+PS V  L  +  D   NV++  K   E+ K+T V+T S  C  +   L +KL    S 
Sbjct: 26  TLPSSVQTLDGICIDILRNVTKTVKSGTEVFKLTVVVTLSRDCGRSANKLMRKLAVDASN 85

Query: 578 KLSDKIDLTPEQDL 591
            L      +P   L
Sbjct: 86  LLLTSNSCSPGDPL 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,744,477
Number of Sequences: 59808
Number of extensions: 917065
Number of successful extensions: 2799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2787
Number of HSP's gapped (non-prelim): 16
length of query: 801
length of database: 16,821,457
effective HSP length: 88
effective length of query: 713
effective length of database: 11,558,353
effective search space: 8241105689
effective search space used: 8241105689
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)