GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001364-TA|BGIBMGA001364-PA|IPR007234|Vps53-like,
N-terminal
         (801 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-8|CAA81595.1|  808|Caenorhabditis elegans Hypothetical pr...   231   1e-60
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    33   0.80 
Z75543-1|CAA99867.1|  314|Caenorhabditis elegans Hypothetical pr...    32   1.8  
AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical ...    32   1.8  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    31   3.2  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    31   3.2  
AF040652-7|AAB95017.1|  210|Caenorhabditis elegans Hypothetical ...    30   5.6  
Z67756-3|CAA91764.2|  345|Caenorhabditis elegans Hypothetical pr...    30   7.4  
AF016443-9|AAC24273.1|  364|Caenorhabditis elegans Hypothetical ...    30   7.4  

>Z27079-8|CAA81595.1|  808|Caenorhabditis elegans Hypothetical
           protein T05G5.8 protein.
          Length = 808

 Score =  231 bits (566), Expect = 1e-60
 Identities = 124/350 (35%), Positives = 193/350 (55%), Gaps = 7/350 (2%)

Query: 17  QINFPSSVMSRIEELMGGTEQFDSDDFDAVAYINRVFPTEQSLSGVESAVARCEFRLSGV 76
           ++    +VM+ I ++     ++   +   +A IN +FPTEQSL+ ++S +A  E  +  +
Sbjct: 8   ELKLSDNVMNEISDMC--ITEYCKPNMSLMAQINELFPTEQSLTQLDSIIASVEGEIGEL 65

Query: 77  EQDIRRLVXXXXXXXXXXXXXLTEAQRCIAELALQVADINKKAERSESMVREITCEIKQL 136
           + ++  LV             L  AQ  + EL   +  I ++ + S+ +VRE+T +IKQL
Sbjct: 66  DNELAYLVETNANVSERGEEALKHAQDAMIELEKSIGSIRERTKSSDEIVREMTRDIKQL 125

Query: 137 DCAKCNLTAAITALNHLHMLAGGVDTLTTMTKNRQYKEIALPMQAIMEVLQHFECYRDIR 196
           D AK NLTA+IT L+HLH+L  GV++L      + Y  IA  + AI+ VLQ F+ Y++  
Sbjct: 126 DIAKRNLTASITTLHHLHILLTGVESLGAWVDKKDYSSIARQLPAILNVLQLFDAYKESD 185

Query: 197 ELSVLRDQVHSIRHDLGNQILADFKQAFTGGSKSNITHRTLSEACGVVDILDPKVKQDLL 256
           +++ L  Q+  ++  L  Q+  D K AF  G  S+     +++ C V   L+  VK++ +
Sbjct: 186 QIANLSGQLDKLKASLTIQLAKDLKNAFQTGQLSD----RITDMCRVAAALEGNVKENFV 241

Query: 257 KWFISMQLQEYQHLYSSEQECAWLTHIERRYAWLKKHLLTFEDT-LGNIFPYQWALSENI 315
           KWFI  QL EY  +Y+  +E AWL  ++ RY W  + L  FE   L NIFP  W +   +
Sbjct: 242 KWFIEQQLSEYVIIYADNEEGAWLDKVDDRYKWFVRKLTDFERAGLSNIFPADWHMGRRL 301

Query: 316 ARQFCKITSTELSNLMAARRNELDVKLLLYAIQNTYNFELLLHKRFTGTD 365
             +FC +T   L  +M  RR +LD KLL +AIQ+T  FE LL KRF   D
Sbjct: 302 TSEFCTVTRDILYRIMTRRRQDLDWKLLGHAIQHTKMFEALLTKRFPEKD 351



 Score =  221 bits (541), Expect = 1e-57
 Identities = 127/354 (35%), Positives = 202/354 (57%), Gaps = 31/354 (8%)

Query: 437 KTSPSEANMTASGEGAVISSCADLFLFYKKCLVQCARLTTGEPML--ELAGVFQKYLREY 494
           ++   + +  +S       S AD+FL  KK + + ++L++    L  ++ GV +  LR Y
Sbjct: 390 RSGEEKPSRESSTHAVPFPSSADMFLLLKKVITESSKLSSEPDALIRDVIGVVRVCLRGY 449

Query: 495 ASSVLQAALPRTNPTXXXXXXXXGNTVPSIVTNLHTLLRDEAGNVSRYTKQEISKITSVI 554
           A+S L A LP               +  S   NL +L+R+E     R T  +   +  ++
Sbjct: 450 ATSCLVAFLPSLG------------SQQSGAANLFSLIREEIA-YPRLTPDQQFLVCCIL 496

Query: 555 TTSEYCLETTIHLEQKLKEKVSPKLSDKIDLTPEQDLFHKIISNCIQMLVQDLETACEPA 614
            T+++C ET+I L++KL +++       +D++ E + F+ I +  +Q+LVQD+E+ C+ A
Sbjct: 497 ATADWCAETSIQLQEKLSQRIPG-----VDISQETEAFYSITNQSLQVLVQDVESTCDAA 551

Query: 615 LQSMTKI----------SWLSFDNVGDQSSYVTQIIMHLKNTVPNLRDNLSSSRKYFTQF 664
           LQS++K+          +W + D VGD+S ++  +  HL+  VP +RD LS  RKYF  F
Sbjct: 552 LQSISKVKCSIFVRIEKTWTAVDCVGDESPFIGSMRAHLRQAVPLIRDMLSDRRKYFAHF 611

Query: 665 CIRFANSFIPKFIQNVYKCKPISTVGSEQLLLDTHMLKTALLELPSIGSEVKRAAPATYT 724
           C++ A     KF+ ++++C+ IST G+EQLLL+TH LKT LL +PSI S +    P  Y 
Sbjct: 612 CLKLATQLAHKFVGSLFRCRTISTHGAEQLLLETHSLKTFLLSVPSIDSIINSKPPTAYV 671

Query: 725 KVVLKLMTKAEMVLKLVMAPLEGNLEGFVTQFVKLLPDCSLAEFHKVLDMKGAK 778
             V   +TKAEM+LK+VM  LE  ++ FV Q++KLLP    AE  KVL+MKG K
Sbjct: 672 TSVNAALTKAEMILKVVMCSLE-TVDEFVEQYIKLLPASDAAEMQKVLEMKGVK 724


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 33.1 bits (72), Expect = 0.80
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 143 LTAAITALNHLHMLAGGVDTLTTMTKNRQYKEIALPMQAIMEVLQHFECYRDIRELSVLR 202
           L AA+   +  H+L   V+T+    KN Q  +  +P +    +LQ F     + +L+ +R
Sbjct: 41  LEAAVRHCDEFHVLKKDVETILDW-KNSQRNQAEIPFKPARVILQDFTGVPAVVDLAAMR 99

Query: 203 DQVHSIRHD 211
           D V ++  D
Sbjct: 100 DAVQNMGAD 108


>Z75543-1|CAA99867.1|  314|Caenorhabditis elegans Hypothetical
           protein K01D12.1 protein.
          Length = 314

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 742 MAPLEGNLEGFVTQFVKLLPDCSLAEFHKVLDMK 775
           +A L GN E F T FV L  +C   E +K LD++
Sbjct: 70  LASLRGNYEMFWTSFVNLTKECDGLEEYKALDIQ 103


>AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical
           protein Y41D4A.4 protein.
          Length = 580

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 323 TSTELSNLMAARRNELDVKLLLYAIQNTYNFELLL 357
           T+T+ + +   +  E D K LLYAIQN+Y +++ L
Sbjct: 89  TNTKKTVVCEKKLTETDYKTLLYAIQNSYYYQMYL 123


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 58   SLSGVESAVARCEFRLSGVEQDIRRLVXXXXXXXXXXXXXLTEAQRCIAELALQVADINK 117
            +L G +  +A+ E R+  +EQ++                   +A+R + E+  QV +  K
Sbjct: 1817 ALKGGKKIIAQLEARIRAIEQEL----DGEQRRHQDTEKNWRKAERRVKEVEFQVVEEKK 1872

Query: 118  KAERSESMVREITCEIK 134
              ER   +V ++ C++K
Sbjct: 1873 NEERLTELVDKLQCKLK 1889


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 58   SLSGVESAVARCEFRLSGVEQDIRRLVXXXXXXXXXXXXXLTEAQRCIAELALQVADINK 117
            +L G +  +A+ E R+  +EQ++                   +A+R + E+  QV +  K
Sbjct: 1817 ALKGGKKIIAQLEARIRAIEQEL----DGEQRRHQDTEKNWRKAERRVKEVEFQVVEEKK 1872

Query: 118  KAERSESMVREITCEIK 134
              ER   +V ++ C++K
Sbjct: 1873 NEERLTELVDKLQCKLK 1889


>AF040652-7|AAB95017.1|  210|Caenorhabditis elegans Hypothetical
           protein T05A8.6 protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 434 QDAKTSPSEANMTASGEGAVISSCADLFLFYKKCLVQCARL-TTGEPMLELAGVFQKYLR 492
           QD  T P  AN+  +  G+ ++ CA L +F +    + A L  + E MLE        ++
Sbjct: 114 QDILTDPMLANVHCASTGSTVNGCATLQIFCENMGCETAELYVSFEKMLEF------LIK 167

Query: 493 EYASSVLQAALP 504
            +   V QA LP
Sbjct: 168 AFRLEVNQALLP 179


>Z67756-3|CAA91764.2|  345|Caenorhabditis elegans Hypothetical
           protein R07A4.4 protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 746 EGNLEGFVTQFVKLLPDCSLAEFHKVLDMKGAKLSKTQMSNLDAVFKNACKSA 798
           +  L  F  + + ++PDC L E  +V  ++G ++S+             C  A
Sbjct: 15  DNTLRNFAVEVLPIVPDCPLGEHSRVQIIEGVEVSREATITFQVAILEQCVQA 67


>AF016443-9|AAC24273.1|  364|Caenorhabditis elegans Hypothetical
           protein C17E7.4 protein.
          Length = 364

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 533 RDEAGNVSRYTKQEISKITSVITTSEYCLETTIHLEQKLKEK 574
           R+E     RY +QE   I SV++   YC+ +   LEQ  KE+
Sbjct: 163 REERRKQERY-EQERESIQSVMSNMAYCMASAQQLEQLKKER 203


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,307
Number of Sequences: 27539
Number of extensions: 708884
Number of successful extensions: 1971
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1957
Number of HSP's gapped (non-prelim): 14
length of query: 801
length of database: 12,573,161
effective HSP length: 87
effective length of query: 714
effective length of database: 10,177,268
effective search space: 7266569352
effective search space used: 7266569352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)