Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001363-TA|BGIBMGA001363-PA|IPR001931|Ribosomal protein
S21e
         (81 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    96   6e-22
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    24   2.2  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    23   5.1  
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    23   6.7  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 87

 Score = 95.9 bits (228), Expect = 6e-22
 Identities = 47/80 (58%), Positives = 58/80 (72%), Gaps = 2/80 (2%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 59
          M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +
Sbjct: 1  MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 60 RRMGESDDCIVRLTKKDGIL 79
          R  GESDDCI RLT +DG+L
Sbjct: 60 RSKGESDDCINRLTTQDGLL 79


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 46  AADTSKMYVVCGAIRRMGESDD 67
           A DT K+ +  G IRR+G ++D
Sbjct: 511 AEDTEKIELYLGKIRRLGITED 532


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 39  VDPATGRAADTSKMYVVCGAIRR 61
           V+P    A++TS M V+  A+RR
Sbjct: 527 VEPRASVASETSSMTVIPNAMRR 549


>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 97

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 6  GEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          G  V +      +   +LI A+D+ + Q+    V    GR +   ++Y+    IR
Sbjct: 13 GHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIR 67


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 332,582
Number of Sequences: 5004
Number of extensions: 9506
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 81
length of database: 2,362,478
effective HSP length: 60
effective length of query: 21
effective length of database: 2,062,238
effective search space: 43306998
effective search space used: 43306998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)