Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001363-TA|BGIBMGA001363-PA|IPR001931|Ribosomal protein
S21e
         (81 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0)                27   1.6  
SB_41304| Best HMM Match : Rad50_zn_hook (HMM E-Value=7.2)             27   2.8  
SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.7  
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               26   4.9  
SB_959| Best HMM Match : No HMM Matches (HMM E-Value=.)                25   6.4  
SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27)                  25   6.4  
SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)                       25   6.4  
SB_1333| Best HMM Match : IncA (HMM E-Value=0.32)                      25   6.4  
SB_57266| Best HMM Match : POPLD (HMM E-Value=0.55)                    25   8.5  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  

>SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0)
          Length = 739

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 26  AKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKK 75
           ++ H +V++     +P T    D SK  VVC A+   G  DD +  ++++
Sbjct: 315 SRTHTAVKIAPRYSEP-TIHVLDASKSVVVCSALMDKGARDDFVEEVSEE 363


>SB_41304| Best HMM Match : Rad50_zn_hook (HMM E-Value=7.2)
          Length = 61

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 29 HASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKK 75
          H +V++     +P T    D SK  VVC A+   G  DD +  ++++
Sbjct: 3  HTAVKIAPRYSEP-TIHVLDASKSVVVCSALMDKGARDDFVEEVSEE 48


>SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 22 RLIHAKDHASVQLVIADVDPATGR 45
          R+ H  +HA  Q++ A +DP TG+
Sbjct: 44 RVHHGINHAKSQILTAKLDPLTGK 67


>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 275

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 34  LVIADVDPATGRAADTSKMYVVCGAI 59
           L++AD+ P T        +Y++C  I
Sbjct: 249 LIVADILPPTSEVVPVISIYIICSTI 274


>SB_959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 3  NDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADV-DPATGRAADTS 50
          +D+ EF D      CS  + +    D  S   V AD+ DPA+ + + T+
Sbjct: 11 SDSDEFFDAVSDIACSLPDEMPSDSDEESEVYVPADITDPASDQESTTT 59


>SB_19157| Best HMM Match : FLO_LFY (HMM E-Value=0.27)
          Length = 560

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 28  DHASVQLVIADVDPATGRAADTSKMYVVCGA 58
           +HA  Q++ A +DP TG+    SK  V   A
Sbjct: 341 NHAKSQILTAKLDPLTGKIVLVSKGIVFLNA 371


>SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)
          Length = 578

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 3   NDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADV-DPATGRAADTS 50
           +D+ EF D      CS  + +    D  S   V AD+ DPA+ + + T+
Sbjct: 424 SDSDEFFDAVSDIACSLPDEMPSDSDEESEVYVPADITDPASDQESTTT 472


>SB_1333| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 302

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 17 CSASNRLIHAKD--HASVQLVIADVDPATG 44
          C A +  +H  D  HA  Q++ A +DP TG
Sbjct: 38 CRAPHGRVHRGDDHHAKSQILTAKLDPLTG 67


>SB_57266| Best HMM Match : POPLD (HMM E-Value=0.55)
          Length = 558

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 14  PRKCSASNRLIHAKDHASVQLVIADVDPATGRAADT 49
           PR  + + +L++A     V+   +D  P T  A DT
Sbjct: 139 PRSLTLAQKLLYAVPATPVESTASDTTPTTHAARDT 174


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 5    AGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPAT 43
            +  F   +CP  C++ +R  H K H+   L +++ D ++
Sbjct: 1121 SASFASPFCPLSCASPSRSTH-KQHSLSSLSLSEGDTSS 1158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,324
Number of Sequences: 59808
Number of extensions: 78145
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 10
length of query: 81
length of database: 16,821,457
effective HSP length: 59
effective length of query: 22
effective length of database: 13,292,785
effective search space: 292441270
effective search space used: 292441270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)