Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001363-TA|BGIBMGA001363-PA|IPR001931|Ribosomal protein
S21e
         (81 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   1.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   2.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
          protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 1.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 67 DCIVRLTKKDGILA 80
          DC VR+ K+ G L+
Sbjct: 58 DCFVRIPKEQGFLS 71


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
          protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 1.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 67 DCIVRLTKKDGILA 80
          DC VR+ K+ G L+
Sbjct: 58 DCFVRIPKEQGFLS 71


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 44   GRAADTSKMYVVCGAIRRMGESD 66
            GR  +++K YVV   +   GES+
Sbjct: 1182 GRGIESAKSYVVDVRVHVPGESE 1204


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,248
Number of Sequences: 429
Number of extensions: 601
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 81
length of database: 140,377
effective HSP length: 47
effective length of query: 34
effective length of database: 120,214
effective search space:  4087276
effective search space used:  4087276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)