GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001363-TA|BGIBMGA001363-PA|IPR001931|Ribosomal protein
S21e
         (81 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     73   3e-14
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    71   9e-14
07_03_1287 + 25510813-25510862,25511326-25511504,25511715-255120...    26   3.3  
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715...    25   5.8  
04_04_1112 + 30984925-30985101,30985204-30985851                       25   5.8  

>03_02_0976 +
          12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 72.9 bits (171), Expect = 3e-14
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I  VD   G        + + G IR
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 61 RMGESDDCIVRLTKK 75
            G++D  + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74


>03_05_0610 -
          26108546-26108671,26108739-26108789,26109410-26109542,
          26109633-26109682
          Length = 119

 Score = 71.3 bits (167), Expect = 9e-14
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I  VD   G        + + G IR
Sbjct: 1  MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 61 RMGESDDCIVRLTKK 75
            G++D  + RL +K
Sbjct: 60 AQGDADSALDRLWQK 74


>07_03_1287 +
           25510813-25510862,25511326-25511504,25511715-25512037,
           25512160-25513950
          Length = 780

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 29  HASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKK 75
           H SV   +A V+ A  +A++++ +  +C A +RM E  + + R  ++
Sbjct: 645 HESVTEALAQVESA--KASESNSLERLCEASKRMNEKKEALERALER 689


>06_02_0322 +
           14369221-14369540,14370240-14370918,14371347-14371573,
           14372121-14372312,14372394-14372550,14373860-14374093
          Length = 602

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 11  LYCPRKCSASNRLIHAKDHASVQLVIADVDPA 42
           + C R  +ASN     K HAS    ++DVD A
Sbjct: 158 ILCVRSGTASNPADSGKVHASHGFYVSDVDAA 189


>04_04_1112 + 30984925-30985101,30985204-30985851
          Length = 274

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 16  KCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKK 75
           K  A+++    KD A      AD+   T RA          GA+ R GE+ D  V  TK 
Sbjct: 135 KHEAADKAADVKDRAKDA---ADMAQGTARAVRDKTAETAEGAMDRAGEAKDRTVEGTKH 191

Query: 76  DG 77
            G
Sbjct: 192 AG 193


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,289
Number of Sequences: 37544
Number of extensions: 71677
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 5
length of query: 81
length of database: 14,793,348
effective HSP length: 60
effective length of query: 21
effective length of database: 12,540,708
effective search space: 263354868
effective search space used: 263354868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)