GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001363-TA|BGIBMGA001363-PA|IPR001931|Ribosomal protein
S21e
         (81 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L04483-1|AAA99893.1|   83|Homo sapiens ribosomal protein S21 pro...   124   5e-29
CR542132-1|CAG46929.1|   83|Homo sapiens RPS21 protein.               124   5e-29
BC021990-1|AAH21990.1|   83|Homo sapiens ribosomal protein S21 p...   124   5e-29
BC018140-1|AAH18140.1|   81|Homo sapiens RPS21 protein protein.       124   5e-29
AL121832-3|CAC21458.1|   83|Homo sapiens ribosomal protein S21 p...   124   5e-29
AJ250907-1|CAB83213.1|   83|Homo sapiens ribosomal protein S21 p...   124   5e-29
AB061843-1|BAB79481.1|   83|Homo sapiens ribosomal protein S21 p...   124   5e-29
AL121832-2|CAC29248.1|   90|Homo sapiens ribosomal protein S21 p...    97   6e-21
AB007157-1|BAA25821.1|   54|Homo sapiens ribosomal protein S21 p...    75   4e-14
BC027976-1|AAH27976.1|   66|Homo sapiens Unknown (protein for MG...    73   1e-13
AL121832-1|CAC29247.1|   66|Homo sapiens ribosomal protein S21 p...    73   1e-13
X79563-1|CAA56100.2|   97|Homo sapiens 8.2 kDa differentiation f...    69   2e-12
BC052262-1|AAH52262.2|  865|Homo sapiens xylosyltransferase II p...    28   4.1  
AJ277442-1|CAC16788.1|  865|Homo sapiens xylosyltransferase II p...    28   4.1  

>L04483-1|AAA99893.1|   83|Homo sapiens ribosomal protein S21
          protein.
          Length = 83

 Score =  124 bits (299), Expect = 5e-29
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A+VD  TGR     K Y +CGAIR
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 61 RMGESDDCIVRLTKKDGILAK 81
          RMGESDD I+RL K DGI++K
Sbjct: 61 RMGESDDSILRLAKADGIVSK 81


>CR542132-1|CAG46929.1|   83|Homo sapiens RPS21 protein.
          Length = 83

 Score =  124 bits (299), Expect = 5e-29
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A+VD  TGR     K Y +CGAIR
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 61 RMGESDDCIVRLTKKDGILAK 81
          RMGESDD I+RL K DGI++K
Sbjct: 61 RMGESDDSILRLAKADGIVSK 81


>BC021990-1|AAH21990.1|   83|Homo sapiens ribosomal protein S21
          protein.
          Length = 83

 Score =  124 bits (299), Expect = 5e-29
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A+VD  TGR     K Y +CGAIR
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 61 RMGESDDCIVRLTKKDGILAK 81
          RMGESDD I+RL K DGI++K
Sbjct: 61 RMGESDDSILRLAKADGIVSK 81


>BC018140-1|AAH18140.1|   81|Homo sapiens RPS21 protein protein.
          Length = 81

 Score =  124 bits (299), Expect = 5e-29
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A+VD  TGR     K Y +CGAIR
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 61 RMGESDDCIVRLTKKDGILAK 81
          RMGESDD I+RL K DGI++K
Sbjct: 61 RMGESDDSILRLAKADGIVSK 81


>AL121832-3|CAC21458.1|   83|Homo sapiens ribosomal protein S21
          protein.
          Length = 83

 Score =  124 bits (299), Expect = 5e-29
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A+VD  TGR     K Y +CGAIR
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 61 RMGESDDCIVRLTKKDGILAK 81
          RMGESDD I+RL K DGI++K
Sbjct: 61 RMGESDDSILRLAKADGIVSK 81


>AJ250907-1|CAB83213.1|   83|Homo sapiens ribosomal protein S21
          protein.
          Length = 83

 Score =  124 bits (299), Expect = 5e-29
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A+VD  TGR     K Y +CGAIR
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 61 RMGESDDCIVRLTKKDGILAK 81
          RMGESDD I+RL K DGI++K
Sbjct: 61 RMGESDDSILRLAKADGIVSK 81


>AB061843-1|BAB79481.1|   83|Homo sapiens ribosomal protein S21
          protein.
          Length = 83

 Score =  124 bits (299), Expect = 5e-29
 Identities = 57/81 (70%), Positives = 66/81 (81%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A+VD  TGR     K Y +CGAIR
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 61 RMGESDDCIVRLTKKDGILAK 81
          RMGESDD I+RL K DGI++K
Sbjct: 61 RMGESDDSILRLAKADGIVSK 81


>AL121832-2|CAC29248.1|   90|Homo sapiens ribosomal protein S21
          protein.
          Length = 90

 Score = 97.5 bits (232), Expect = 6e-21
 Identities = 44/62 (70%), Positives = 50/62 (80%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A+VD  TGR     K Y +CGAIR
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60

Query: 61 RM 62
          RM
Sbjct: 61 RM 62


>AB007157-1|BAA25821.1|   54|Homo sapiens ribosomal protein S21
          protein.
          Length = 54

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 34/54 (62%), Positives = 41/54 (75%)

Query: 21 NRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTK 74
          NR+I AKDHAS+Q+ +A+VD  TGR     K Y +CGAIRRMGESDD I+RL K
Sbjct: 1  NRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAK 54


>BC027976-1|AAH27976.1|   66|Homo sapiens Unknown (protein for
          MGC:34066) protein.
          Length = 66

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 33/45 (73%), Positives = 38/45 (84%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR 45
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A+V    GR
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVSWEPGR 45


>AL121832-1|CAC29247.1|   66|Homo sapiens ribosomal protein S21
          protein.
          Length = 66

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 33/45 (73%), Positives = 38/45 (84%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR 45
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A+V    GR
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVSWEPGR 45


>X79563-1|CAA56100.2|   97|Homo sapiens 8.2 kDa differentiation
          factor protein.
          Length = 97

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/37 (81%), Positives = 34/37 (91%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIA 37
          MQNDAGEFVDLY PRKCSASNR+I AKDHAS+Q+ +A
Sbjct: 1  MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVA 37


>BC052262-1|AAH52262.2|  865|Homo sapiens xylosyltransferase II
           protein.
          Length = 865

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 14  PRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVV-CGAIRRMGESD 66
           PR   +S  L    DH    LV   V P+    A+T +M+++  G+++ +G SD
Sbjct: 585 PRGLPSSVHLYFYDDHFQGYLVTQAVQPSAQGPAETLEMWLMPQGSLKLLGRSD 638


>AJ277442-1|CAC16788.1|  865|Homo sapiens xylosyltransferase II
           protein.
          Length = 865

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 14  PRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVV-CGAIRRMGESD 66
           PR   +S  L    DH    LV   V P+    A+T +M+++  G+++ +G SD
Sbjct: 585 PRGLPSSVHLYFYDDHFQGYLVTQAVQPSAQGPAETLEMWLMPQGSLKLLGRSD 638


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,253,089
Number of Sequences: 224733
Number of extensions: 287361
Number of successful extensions: 579
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 14
length of query: 81
length of database: 73,234,838
effective HSP length: 59
effective length of query: 22
effective length of database: 59,975,591
effective search space: 1319463002
effective search space used: 1319463002
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)