GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001363-TA|BGIBMGA001363-PA|IPR001931|Ribosomal protein
S21e
         (81 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...   111   4e-26
Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    26   3.6  
Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AF106575-11|AAC78166.1|  329|Caenorhabditis elegans Hypothetical...    25   8.4  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
          protein, small subunitprotein 21 protein.
          Length = 88

 Score =  111 bits (268), Expect = 4e-26
 Identities = 52/82 (63%), Positives = 63/82 (76%), Gaps = 1/82 (1%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAI 59
          MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CGAI
Sbjct: 1  MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 60 RRMGESDDCIVRLTKKDGILAK 81
          RRMGESDD I+RL +KDG++ +
Sbjct: 61 RRMGESDDAILRLAQKDGLVPR 82


>Z92967-1|CAB07477.1|  220|Caenorhabditis elegans Hypothetical
           protein T25E12.4b protein.
          Length = 220

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 39  VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 77
           V  + G  + +S   +   A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
          protein C05G5.2 protein.
          Length = 685

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 3  NDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIA 37
          ND  +F  L   R  SA++R+ + K+H +V+ VI+
Sbjct: 45 NDLEKFSRLVALRVNSAASRMANLKNHKAVRQVIS 79


>Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical
           protein T24A11.3 protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 4   DAGEFVDLYCPRKCSASNRL 23
           DA    D+YCP  C   N L
Sbjct: 254 DAKVINDIYCPNACQGRNHL 273


>AF106575-11|AAC78166.1|  329|Caenorhabditis elegans Hypothetical
          protein K04F1.7 protein.
          Length = 329

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 2  QNDAGEFVDLYCPRKCSASNRLIHAKDHAS 31
          Q D  EF D +C  +C+     +++K  AS
Sbjct: 31 QADISEFFDSHCESRCNFLEEHLNSKTKAS 60


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,173
Number of Sequences: 27539
Number of extensions: 57011
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 5
length of query: 81
length of database: 12,573,161
effective HSP length: 61
effective length of query: 20
effective length of database: 10,893,282
effective search space: 217865640
effective search space used: 217865640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)