GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001363-TA|BGIBMGA001363-PA|IPR001931|Ribosomal protein
S21e
         (81 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    78   6e-16
At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    77   2e-15
At3g04890.1 68416.m00531 expressed protein                             28   0.89 
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi...    27   1.2  
At1g61720.1 68414.m06961 dihydroflavonol 4-reductase (dihydrokae...    26   2.7  
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,...    26   3.6  
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    25   4.8  
At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containi...    25   4.8  
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi...    25   4.8  
At3g45830.1 68416.m04960 expressed protein                             25   6.3  

>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
          ribosomal protein S21, cytosolic - Oryza sativa,
          PIR:S38357
          Length = 82

 Score = 78.2 bits (184), Expect = 6e-16
 Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          M+NDAG+  +LY PRKCSA+NR+I +KDHASVQL I  +D A G        + +CG +R
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59

Query: 61 RMGESDDCIVRLTKKDGILAK 81
            G++D  + RL +K  + AK
Sbjct: 60 AQGDADSGVDRLWQKKKVEAK 80


>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
          ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 1  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 60
          MQN+ G+  +LY PRKCSA+NRLI +KDHASVQL I  +D A G        + +CG +R
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLD-ANGLYTGQFTTFALCGFVR 59

Query: 61 RMGESDDCIVRLTKKDGILAK 81
            G++D  + RL +K  + AK
Sbjct: 60 AQGDADSGVDRLWQKKKVEAK 80


>At3g04890.1 68416.m00531 expressed protein
          Length = 216

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 19  ASNRLIHAKDHASVQLVIADVDPATG-RAADTSKMYVVCGAIRRMGESDDCI 69
           +S  +   KD +  ++   DVD   G   +D    Y V G +     SDDCI
Sbjct: 57  SSTSIATNKDRSKNEVTAGDVDDVMGILRSDYRNFYFVTGVLTSAIYSDDCI 108


>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 682

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 35  VIADVDPATGRAADTSKMYVVCGA-----IRRMGESDDCIVRLTKKD 76
           VI+++D A    AD+S   V C A     + ++ +SD CI  + + D
Sbjct: 339 VISEIDAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIPRLD 385


>At1g61720.1 68414.m06961 dihydroflavonol 4-reductase
           (dihydrokaempferol 4-reductase) family (BAN) similar to
           dihydroflavonol 4-reductase GI:1332411 from [Rosa
           hybrida]
          Length = 340

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 15  RKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTK 74
           +K S S   +H  D A   L +A+ + A+GR       Y+ C     + E  D +++   
Sbjct: 233 QKLSGSISFVHVDDLARAHLFLAEKETASGR-------YICCAYNTSVPEIADFLIQRYP 285

Query: 75  KDGILAK 81
           K  +L++
Sbjct: 286 KYNVLSE 292


>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 848

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 5   AGEFVDLYCPRKCSASNRLIHAKDHASVQLVIAD 38
           AG    L+ P   SA +   +AKD+ S  LVI D
Sbjct: 341 AGPKETLFVPDVSSAGDEATNAKDNQSAPLVIKD 374


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 25  HAKDHASVQLVIADVDPATGRAADTS 50
           HAK+ A+V  ++A +DP TG+    S
Sbjct: 587 HAKEAATVVKLVAMLDPKTGQPTKKS 612


>At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 654

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 36  IADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVR 71
           I  + PA GRA    +   V G   RMG S+D +V+
Sbjct: 208 IVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVK 243


>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
           finger family protein contains Pfam profiles: PF01448
           ELM2 domain, PF00628 PHD-finger
          Length = 631

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 56  CGAIRRMGE-SDDCIVRLTKK 75
           CG  RR G  SDDC+V   KK
Sbjct: 181 CGETRRRGNRSDDCLVYSRKK 201


>At3g45830.1 68416.m04960 expressed protein
          Length = 1298

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/54 (16%), Positives = 32/54 (59%)

Query: 23  LIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKD 76
           L++A+D  S +  +++ D  +G     ++++V C A+ +  ++ + ++ + +++
Sbjct: 693 LVNARDRLSRKYQVSEDDGNSGDENLEARLFVSCNALSKKRKTRESLMDMERRE 746


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,072
Number of Sequences: 28952
Number of extensions: 53380
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 10
length of query: 81
length of database: 12,070,560
effective HSP length: 60
effective length of query: 21
effective length of database: 10,333,440
effective search space: 217002240
effective search space used: 217002240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)