Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001362-TA|BGIBMGA001362-PA|undefined
         (60 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5)                 26   3.8  
SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)                   26   5.1  

>SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5)
          Length = 547

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 5   APVQAARGTRTSSLDQLDFQERRQ 28
           AP QA+R T+TS L   D Q  RQ
Sbjct: 258 APRQASRKTKTSKLQDQDKQAARQ 281


>SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)
          Length = 355

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 5   APVQAARGTRTSSLDQLDFQERRQLIASSLSLTDFL 40
           AP QA+R T+TS L   D Q  R   AS  + T  L
Sbjct: 137 APRQASRKTKTSKLQDQDKQAARPRQASCKTKTSKL 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.128    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,375,703
Number of Sequences: 59808
Number of extensions: 31275
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 2
length of query: 60
length of database: 16,821,457
effective HSP length: 39
effective length of query: 21
effective length of database: 14,488,945
effective search space: 304267845
effective search space used: 304267845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)