GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001362-TA|BGIBMGA001362-PA|undefined
         (60 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   0.68 
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   0.90 
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    24   2.1  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    23   3.6  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    23   3.6  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    23   4.8  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    22   8.4  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 0.68
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 7   VQAARGTRTSSLDQLDFQERRQLIASSLSLTDFLHVGAKEVAAVAG 52
           ++ ++G + +S  +LD Q+  Q   S   + + L  G K +A V G
Sbjct: 493 IRTSQGPKHTSEIRLDMQKTMQRDVSVFRMEETLQEGVKNIARVDG 538


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 0.90
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 35  SLTDFLHVGAKEVAAVAGDGIMIT 58
           SL  F+++  KE++ VA D IMIT
Sbjct: 79  SLRQFVYIIIKELSVVAEDVIMIT 102


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 19  DQLDFQERRQLIASSLSLTDFLHVGAKEVAAVAGDGIMITK 59
           D   +Q+  +  ASS SLTD LH   +   A A  G+  T+
Sbjct: 245 DPTKWQKHAKRTASSNSLTDLLHASNQTFMAPA-SGLQSTE 284


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
          phospholipase C |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 424

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 22 DFQERRQLIASSLSLTDFLHVGA 44
          DFQE R L++ +L  + F H  A
Sbjct: 55 DFQEIRNLVSCNLVYSRFFHSAA 77


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 16 SSLDQLDFQERRQLIASSLSLTDFLHVGAKEVAAVAGDGI 55
          SS+    +  R+  IA  +  + + HV    V    GDGI
Sbjct: 26 SSIGLAAYHIRKDAIALDIPNSTYQHVSKNRVPPTDGDGI 65


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 486

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 12 GTRTSSLDQLDFQERRQLIASSLSLTDFLHVGAKEVAAVAG 52
          G  T  +   +++ RR  +AS L   DF+ V +  V  + G
Sbjct: 56 GELTPRISAQEYKTRRDRVASLLEDNDFMIVTSAPVRHMCG 96


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 23  FQERRQLIASSLSLTDFLHVGAKEVAAVAGDGIM 56
           F+  RQ++A   + + F   GA  +  VAG G++
Sbjct: 274 FECGRQILAKEGARSFFKGAGANILRGVAGAGVL 307


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.128    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,836
Number of Sequences: 5004
Number of extensions: 4363
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 60
length of database: 2,362,478
effective HSP length: 41
effective length of query: 19
effective length of database: 2,157,314
effective search space: 40988966
effective search space used: 40988966
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)