GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001362-TA|BGIBMGA001362-PA|undefined
         (60 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    26   2.7  
Z54269-1|CAA91022.2|  815|Caenorhabditis elegans Hypothetical pr...    25   8.3  

>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
           protein F59A6.5 protein.
          Length = 1286

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 13  TRTSSLDQLD--FQERRQLIASSLSLTDFLH 41
           T+   LD+L+   QE++Q IA S  L  +LH
Sbjct: 624 TKEDKLDKLEEELQEKKQQIAESKELVTYLH 654


>Z54269-1|CAA91022.2|  815|Caenorhabditis elegans Hypothetical
           protein F02C12.1 protein.
          Length = 815

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 18  LDQLDFQERRQLIASSLSLTDFLHVGAKEVAA 49
           L  LD + + +L AS   +T +L+VG  ++AA
Sbjct: 650 LQALDARGQSKLPASKQKITTYLNVGWDDIAA 681


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.128    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,017,904
Number of Sequences: 27539
Number of extensions: 23185
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 3
length of query: 60
length of database: 12,573,161
effective HSP length: 41
effective length of query: 19
effective length of database: 11,444,062
effective search space: 217437178
effective search space used: 217437178
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)