GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001362-TA|BGIBMGA001362-PA|undefined
         (60 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    18   8.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    18   8.2  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 8  QAARGTRTSSLDQLDFQERRQLIASSLSLTD 38
          Q AR  R  + ++   + RRQ ++  L LT+
Sbjct: 31 QLARLKREFAENRYLTERRRQQLSRDLGLTE 61


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 16  SSLDQLDFQERRQLIASSLSL 36
           SS    +FQ+RR  + +  SL
Sbjct: 200 SSYSLTEFQQRRAFLETRQSL 220


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.128    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,038
Number of Sequences: 429
Number of extensions: 413
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 60
length of database: 140,377
effective HSP length: 40
effective length of query: 20
effective length of database: 123,217
effective search space:  2464340
effective search space used:  2464340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)