GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001362-TA|BGIBMGA001362-PA|undefined
         (60 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48090.2 68414.m05363 C2 domain-containing protein contains P...    27   2.1  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    27   2.1  
At3g24310.1 68416.m03052 myb family transcription factor similar...    25   6.3  
At1g64960.1 68414.m07363 expressed protein                             25   8.4  

>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 3427

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 19   DQLDFQERRQLIASSLSLTDFLHVGAKEVAAVAGDG 54
            D +    RRQL+A SL + ++ + G  +V +++  G
Sbjct: 1802 DVVHLSPRRQLVADSLGIDEYTYDGCGKVISLSEQG 1837


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
            profile: PF00168 C2 domain
          Length = 4144

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 19   DQLDFQERRQLIASSLSLTDFLHVGAKEVAAVAGDG 54
            D +    RRQL+A SL + ++ + G  +V +++  G
Sbjct: 1802 DVVHLSPRRQLVADSLGIDEYTYDGCGKVISLSEQG 1837


>At3g24310.1 68416.m03052 myb family transcription factor similar to
           myb protein 305 GB:JQ0958 from [garden snapdragon]
           (Plant Cell (1991) 3 (2), 115-125);
          Length = 269

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 5   APVQAARGTRTSSLDQLDFQERRQL-IASSLSLTDFLHVGAKEVAAVAGD 53
           +P  +A  T+   L +  FQ++RQ+ +     L  F  +  K++ ++  D
Sbjct: 124 SPTNSAEKTKNRILKRQQFQQQRQMELQQEQQLLQFNQIDMKKIMSLLDD 173


>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 2   SLSAPVQAARGTRTSSLDQLDFQERRQLIASSLSLTDFLHV 42
           S S P +  RGT  +S D    Q + Q++AS   L+  LH+
Sbjct: 82  SNSPPTKRHRGTTGTSPDSDLDQRKHQILASLQILSYVLHL 122


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.128    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,012,453
Number of Sequences: 28952
Number of extensions: 23756
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 4
length of query: 60
length of database: 12,070,560
effective HSP length: 40
effective length of query: 20
effective length of database: 10,912,480
effective search space: 218249600
effective search space used: 218249600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)