GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001361-TA|BGIBMGA001361-PA|IPR002557|Chitin binding
Peritrophin-A
         (351 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.43 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.0  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   6.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.9  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 202 ARQEVPSTDNKNVVPPRQEEEHPSDNVKDPASTAKGKSEREDYANEGEDNDGALTR---- 257
           A   +P   N  V  P Q ++H    V+ P  T   +S ++     G+  D +L R    
Sbjct: 6   ANSYIPDLRNGGVEHPHQHQQHYGAAVQVPQQT---QSVQQQSQQAGDPCDPSLLRQGVP 62

Query: 258 ---YGGKDPTCDPPVPICPIGTTKMYNMPDPADCRYY 291
              YG      D P P  P      YN  D  +  YY
Sbjct: 63  GHHYGAAGSQQDMPYPRFP-----PYNRMDMRNATYY 94


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 221 EEHPSDNVKDPASTAKGKSEREDYANEGEDNDGALT 256
           ++   D   +     +G+SE E      ED DGA++
Sbjct: 278 DDRDDDEENEEEEDGRGQSEAEKRLKLDEDADGAVS 313


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 251 NDGALTRYGGKDPT 264
           N G + +YGG+ PT
Sbjct: 63  NKGMINQYGGEQPT 76


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 190 QGSTPTEHHDSSARQEVPSTDNKNVVPPR 218
           Q +T  E+H +   +  PS D   VV PR
Sbjct: 536 QYNTRAENHQTGTAKMGPSYDPMAVVSPR 564


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,977
Number of Sequences: 429
Number of extensions: 5166
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 351
length of database: 140,377
effective HSP length: 58
effective length of query: 293
effective length of database: 115,495
effective search space: 33840035
effective search space used: 33840035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)