GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001360-TA|BGIBMGA001360-PA|undefined
         (141 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0232 - 16053034-16053597                                         27   4.3  
10_08_0229 - 16016818-16017387                                         27   7.5  
05_06_0192 - 26273599-26274543                                         26   9.9  

>10_08_0232 - 16053034-16053597
          Length = 187

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/15 (73%), Positives = 12/15 (80%)

Query: 111 SGGTKGGDAEGQAEG 125
           +GGT GGD EGQA G
Sbjct: 109 AGGTGGGDGEGQAGG 123


>10_08_0229 - 16016818-16017387
          Length = 189

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 104 PVVAQGNSGGTKGGDAEGQAEG 125
           P     N+GGT GG+  G+A+G
Sbjct: 103 PYRGSSNAGGTGGGEGGGRADG 124


>05_06_0192 - 26273599-26274543
          Length = 314

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 5   VSAPAITLGRSDGPLVASLDLPDEDGDATAF 35
           V  PA  +GR +G +    D+P E  D T+F
Sbjct: 275 VGNPARLIGRKNGEVEKDEDMPGESMDHTSF 305


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.308    0.130    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,224
Number of Sequences: 37544
Number of extensions: 67533
Number of successful extensions: 208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 3
length of query: 141
length of database: 14,793,348
effective HSP length: 75
effective length of query: 66
effective length of database: 11,977,548
effective search space: 790518168
effective search space used: 790518168
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 55 (26.2 bits)