Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001357-TA|BGIBMGA001357-PA|undefined
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   1.4  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    26   5.6  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    26   5.6  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   7.4  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.4  
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    26   7.4  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 7/34 (20%)

Query: 235 EGLQKPQIMNQTILNKTGR-------CSPYGREH 261
           + + K  I+N  +L KTGR       CS YGREH
Sbjct: 296 DDIDKGLILNDHVLEKTGRTSLFYLPCSIYGREH 329


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 98  DVLMKRQQQPLK---EDSSIRDFRVVCEKALLEQQKQLARVTQLCEKLTERQATEI 150
           DV+   +Q  LK   ED S+     + E   L++ + LAR T++C K     + EI
Sbjct: 125 DVIACCKQLVLKNFFEDESLMSTEEIIEILSLDELRSLARQTKVCGKSRSEISKEI 180


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 100 LMKRQQQPLKEDSSIRDFRVVCEKALLEQQKQLARVTQLCEKLTERQA 147
           L+  + + L++ S I + +   EK+L + + +    T+L EK  E QA
Sbjct: 38  LLNNKNEYLRQLSEINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQA 85


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 203 VFVQRGRSPPARPPL-CPVNFTDKVVTTDV---DRSEGLQKPQIMNQTILNKTGRCSPY 257
           ++V+    P   P L  P  FTD     D+   +   G++KP + +Q  L K G   P+
Sbjct: 460 IYVREAFVPQNHPVLRAPSLFTDSPTYEDMLLLNSIIGIEKPPVASQKDLEKAGGVFPF 518


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 100 LMKRQQQPLKEDSSIRDFRVVCEKALLEQQKQLARVTQLCEKLTERQATE 149
           ++ R+Q+  KE+  I++        LLE+Q+QL    +  E  TER  +E
Sbjct: 126 MVNRKQRAAKEEQKIQEEFERQITDLLEEQQQLKLEIERLEAETERANSE 175


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 95  PASDVLMKR---QQQPLKEDSSIRDFRVVCEKALLEQQKQL--ARVTQLCEKLTERQATE 149
           P   VL K+    ++ LK+++   + RV  E+ALL  Q+QL  A++    +K+ ER    
Sbjct: 7   PGLSVLKKKIRDNERLLKKENLPANIRVEHERALLGLQEQLSMAQLEHKKQKIFERYKKV 66

Query: 150 IKCDRTVVXXXXXXXXXXXXXXXXGDERRKDHNRT-QKCK 188
              +R                    DE+RK   ++ +KC+
Sbjct: 67  RFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMRKCQ 106


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,103,155
Number of Sequences: 5004
Number of extensions: 36827
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 6
length of query: 295
length of database: 2,362,478
effective HSP length: 72
effective length of query: 223
effective length of database: 2,002,190
effective search space: 446488370
effective search space used: 446488370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)