Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001357-TA|BGIBMGA001357-PA|undefined
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0006 - 20030673-20030895,20031432-20031478,20031597-200316...    29   4.4  
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    28   7.8  

>09_05_0006 -
           20030673-20030895,20031432-20031478,20031597-20031665,
           20032590-20032725,20032900-20033067,20034286-20034354,
           20034535-20034631,20034742-20034820,20035702-20035872
          Length = 352

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 11/52 (21%)

Query: 205 VQRGRSPPARPPLCPVNFTDKVVTTDVDRSEGLQKPQIMN-QTILNKTGRCS 255
           VQ G S   +PPLC           D+DR  GL++  +    T+L+  GRCS
Sbjct: 149 VQEGSSIGMKPPLC----------LDMDRMSGLRERDVSRIGTLLDSIGRCS 190


>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 209  RSPPARPPLCPVNFTDKVVTTDVDRSEGLQKPQI 242
            R+PP++PP C +  T   +   V    G QKP I
Sbjct: 1909 RAPPSKPPECELPATVSAIAQSVCLLLGEQKPAI 1942


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,619,719
Number of Sequences: 37544
Number of extensions: 267076
Number of successful extensions: 509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 2
length of query: 295
length of database: 14,793,348
effective HSP length: 82
effective length of query: 213
effective length of database: 11,714,740
effective search space: 2495239620
effective search space used: 2495239620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)