GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001357-TA|BGIBMGA001357-PA|undefined
         (295 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              35   0.069
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)                31   1.1  
SB_12754| Best HMM Match : Vicilin_N (HMM E-Value=0.49)                31   1.5  
SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 102  KRQQQPLKEDSSIRDFRVVCEKALLEQQKQLARVTQLCEKLTERQATEIKCDRTVVXXXX 161
            KR+QQ L+++   ++ +++ EK   E++KQ  R+ +  EK  +++A   K ++  +    
Sbjct: 925  KRRQQQLEKEKKEKEKKLLIEKEKREKEKQKERLREKEEKEKQKEAERAKKEKERLLQED 984

Query: 162  XXXXXXXXXXXXGDERRKDHNRTQKCKTYKIIMNKLDELNRV 203
                         ++R+ +  + +K K  ++   K D L RV
Sbjct: 985  KLHEKEEKDRKDKEKRKVEKEKREKDK--QVEKEKKDSLKRV 1024


>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
          Length = 420

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 99  VLMKRQQQPLKEDSSIRDFRVVCEKALLEQQKQLARVTQLCEKLTERQATEIK 151
           ++  ++ Q  K +   R+FR+   K L   + QL  ++ + EKL+E Q  E+K
Sbjct: 243 IIAYKKSQTQKNNQKYRNFRLNGRKPL--SKNQLLEISSVREKLSEEQVAELK 293


>SB_12754| Best HMM Match : Vicilin_N (HMM E-Value=0.49)
          Length = 440

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 100 LMKRQQ-QPLKE-DSSIRDFRVVCEKALLEQQKQLARVTQLCEKLTERQAT-EIKCDRTV 156
           LM RQ  Q +KE  S +R F  +C+    E+Q QL   +   EKLTE + T E K     
Sbjct: 70  LMSRQSMQTIKELQSELRRFEELCK----ERQHQLRESSSKIEKLTEEKLTAENKAQGLQ 125

Query: 157 VXXXXXXXXXXXXXXXXGDERRKDHNRTQK-CKTYKIIMNKLDELNRVFVQR 207
           V                 +  +K+ ++ Q+     +++  KL++  R+  ++
Sbjct: 126 VELKTNLQRHEEKAKSLNEMIKKEIDKRQELVNEMQVVKKKLNDSERLLQEK 177


>SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 207 RGRSPPARPPLCPVNFTDKVVTTDVDRSEGLQKPQI--MNQTILNKTGRCSPYGRE 260
           R +SPP+RP     + T    +T  D   G + P    M++ +L +TGR  PY  +
Sbjct: 105 RTKSPPSRPAAVAAHCTQ---STAFDDRPGRRDPSRKGMHRKLLGQTGRMRPYDHQ 157


>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 245 QTILNKTGRCSPYGREHIVMRSMTQA-YAVDIA-PKEVSKFNGESPNVLIERL 295
           Q    K GRCS      I ++S  +  + V +A P+EV+  +GE P++L+ R+
Sbjct: 660 QVFSGKLGRCSD---PSITVKSDCKGLFYVQLADPREVTTLSGEPPSMLVPRV 709


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,711,599
Number of Sequences: 59808
Number of extensions: 303446
Number of successful extensions: 762
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 5
length of query: 295
length of database: 16,821,457
effective HSP length: 82
effective length of query: 213
effective length of database: 11,917,201
effective search space: 2538363813
effective search space used: 2538363813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)