GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001357-TA|BGIBMGA001357-PA|undefined
         (295 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032236-1|AAH32236.1|  348|Homo sapiens armadillo repeat contai...    31   3.7  
AK096955-1|BAC04910.1|  348|Homo sapiens protein ( Homo sapiens ...    31   4.8  

>BC032236-1|AAH32236.1|  348|Homo sapiens armadillo repeat
           containing, X-linked 4 protein.
          Length = 348

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 4/136 (2%)

Query: 119 VVCEKALLEQQKQLARVTQLCEKLTERQATEIKCDRTVVXXXXXXXXXXXXXXXXGDERR 178
           V+ E   L + K  AR   + E +T+   T+ +  + V                   E +
Sbjct: 217 VMTEAVTLTEVKAKAREVAMKEAVTQ---TDAEAGKIVKKEAVTQTKAKAWALVAKTEAK 273

Query: 179 KDHNRTQKCKTYKIIMNKLDELNRVFVQRGRSPPARPPLCPVNFTDKVVTTDVDRSEGLQ 238
           ++     K +T+ I+  K  E+NRV V +  +      +  +  T+K    D  ++  L+
Sbjct: 274 REAMTQTKAETH-ILAEKETEINRVMVTQSETLAVPREVAKMGATNKTGIVDETKTRALE 332

Query: 239 KPQIMNQTILNKTGRC 254
           +  ++ +   +K   C
Sbjct: 333 ETVLIPRAFPSKNASC 348


>AK096955-1|BAC04910.1|  348|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39636 fis, clone SMINT2002976. ).
          Length = 348

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 4/136 (2%)

Query: 119 VVCEKALLEQQKQLARVTQLCEKLTERQATEIKCDRTVVXXXXXXXXXXXXXXXXGDERR 178
           V+ E   L + K  AR   + E +T+   T+ +  + V                   E +
Sbjct: 217 VMTEAVTLTEVKAKAREVAMKEAVTQ---TDAEAGKIVKKEAVTQTKAKAWALVAKTEAK 273

Query: 179 KDHNRTQKCKTYKIIMNKLDELNRVFVQRGRSPPARPPLCPVNFTDKVVTTDVDRSEGLQ 238
           ++     K +T+ I+  K  E+NRV V +  +      +  +  T+K    D  ++  L+
Sbjct: 274 REAMTQTKAETH-ILAEKETEINRVMVTQSETLAVPREVAKMGATNKTGIVDETKTRALE 332

Query: 239 KPQIMNQTILNKTGRC 254
           +  ++ +   +K   C
Sbjct: 333 ETVLIPRAFPSKDASC 348


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,559,967
Number of Sequences: 224733
Number of extensions: 1233779
Number of successful extensions: 2558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2558
Number of HSP's gapped (non-prelim): 2
length of query: 295
length of database: 73,234,838
effective HSP length: 89
effective length of query: 206
effective length of database: 53,233,601
effective search space: 10966121806
effective search space used: 10966121806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)