Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001356-TA|BGIBMGA001356-PA|undefined
         (144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    28   0.49 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   2.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   3.4  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   6.0  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    25   6.0  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    24   7.9  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    24   7.9  

>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 10  ARVSPDSDERYAHPAMTRSHYEEYSYSSNGE 40
           A V PD +ERYA P +      +Y Y+S  E
Sbjct: 265 AAVLPDGEERYATPDLVPDTTAQYPYASATE 295


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 109 FTRRPVTRNSNLLSAVLCLVKELDYPSLEVAE 140
           FT+ P  R   L  A+ C++  + +P L++AE
Sbjct: 803 FTQAPYER---LFYAIKCIITSITHPKLDIAE 831


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 54  VVSPPHHYHEPYYEKPDRSESYQQMPQP 81
           V S P H  EP   KP+ S +  + P+P
Sbjct: 206 VTSNPPHTEEPVAAKPEASSTATKGPRP 233


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 74  SYQQMPQPRSEVWEQDRCSAREREYPSAVMAEHRGFTRRPVTRNS 118
           S +Q+P+P  + W+ +  S+  +      +     F+  P T  S
Sbjct: 447 SARQLPKPPVQAWQNENLSSNNKPQEYVGVENDYNFSNNPPTAMS 491


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 3  PTRRTTVARVSPDSDERYAHPAM 25
          PT R TV  ++PD+ E +  PA+
Sbjct: 32 PTSRGTVPHLTPDNVEEFDIPAL 54


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 7   TTVARVSPDSDERYAHPAMTRSHYEEYSYSSNGEC 41
           ++V   SP+SD ++  P  TR   E Y+     EC
Sbjct: 223 SSVKPPSPNSDSKFFLPFKTRPWKEVYAERCRVEC 257


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 2   SPTRRTTVARVSPDSDERYAHPAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHY 61
           S ++  T   VS         PA+ +S  +  S  SN   R+             P    
Sbjct: 261 SISQAATPRTVSNSETSYVGSPALKQS--KPNSLKSNNTSRKTSASSAITKPKARPHTSR 318

Query: 62  HEPYYEKPDRSESYQQMPQPRSEVWE 87
           H+ +    D  E   ++P   SE+W+
Sbjct: 319 HDEFVVSDD-DELNDRVPDVSSEIWK 343


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.126    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,406
Number of Sequences: 5004
Number of extensions: 23331
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 7
length of query: 144
length of database: 2,362,478
effective HSP length: 67
effective length of query: 77
effective length of database: 2,027,210
effective search space: 156095170
effective search space used: 156095170
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)