Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001356-TA|BGIBMGA001356-PA|undefined
(144 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0227 - 26994462-26994591,26994714-26994803,26994895-269950... 33 0.12
06_01_0506 + 3648546-3649256 29 1.9
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 28 3.4
01_06_0125 + 26711157-26713297,26715026-26715206 27 4.5
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 27 5.9
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 27 5.9
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 7.9
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 27 7.9
>02_05_0227 -
26994462-26994591,26994714-26994803,26994895-26995022,
26995179-26995573,26995666-26995792,26995909-26995986,
26996096-26996198,26996315-26996589,26996700-26996726
Length = 450
Score = 32.7 bits (71), Expect = 0.12
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 23 PAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQMPQPR 82
PAM + + SSNG+ Q ++S H KP S + Q Q
Sbjct: 262 PAMKK--IQRVQPSSNGQKMQQTLQSKRPQAMLSQSHGQQSLQSRKPKPSLNGQNFRQKV 319
Query: 83 SEVWEQDRCSAREREYP-SAVMAEH-RGFTRRPVTRNSNLLSAVLCLVKELDYPSL 136
S Q + R P SAV +H +G TRR V R S C +E+DY S+
Sbjct: 320 SAPLAQKHLAPSSRPKPSSAVHNDHGKGKTRRLVKRKSKEDG---CDEEEVDYKSI 372
>06_01_0506 + 3648546-3649256
Length = 236
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 59 HHYHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREY 98
H + E Y P R +S+QQ P P + +++ +A E EY
Sbjct: 119 HEFRELYDSIPKRRKSHQQHPLPSTAAADEEAAAADE-EY 157
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 55 VSPPH-HYHEPYYEKPDRSESYQQMPQP 81
+ PPH +YH P+ + P+ SY P P
Sbjct: 47 IPPPHLYYHGPFPQHPNAYPSYFARPPP 74
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 27.5 bits (58), Expect = 4.5
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 67 EKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSAVMAEHRGFTRRPVTRNSNLLSAVLC 126
E PD +E + P S++W++ R P AV +E +G PV N C
Sbjct: 150 EAPDDAEGDEDDTLPLSQLWKRRRLGE-----PGAVKSE-KGDGHNPVDSGGN--DPPKC 201
Query: 127 LVKELDYPSLEVAEMAVR 144
D P EM R
Sbjct: 202 TSARTDVPEASTGEMVSR 219
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 62 HEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSAVMAEHRGF 109
++P KPD + + +P+P+SE ++ +RE+ + A HR F
Sbjct: 331 NDPCTPKPDPNP-FTYVPEPKSEKFKFHLMLNADREFLAQKTAPHRDF 377
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 67 EKPDRSESYQQMPQPRSEVWEQDRCSARERE 97
++P+ SES Q P S+ EQ ARE E
Sbjct: 196 QRPEASESSQPSSSPPSQPQEQPEAKAREVE 226
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 60 HY--HEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSA 101
HY + PY ++ + YQQ QP++++ Q+ A + P A
Sbjct: 259 HYPGYNPYMQQYQQYGQYQQYTQPQTQIAPQNVAQAPAQSAPYA 302
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 57 PPHHYHEPYYEKPDRSESYQQMPQPRSE 84
PPHH H P++ P + P P +E
Sbjct: 62 PPHHPHPPHHPHPPHHHPHPH-PDPAAE 88
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.126 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,289,602
Number of Sequences: 37544
Number of extensions: 156986
Number of successful extensions: 386
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 13
length of query: 144
length of database: 14,793,348
effective HSP length: 75
effective length of query: 69
effective length of database: 11,977,548
effective search space: 826450812
effective search space used: 826450812
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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