GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001356-TA|BGIBMGA001356-PA|undefined
         (144 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.20 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.20 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   0.61 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   0.61 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   0.61 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   0.61 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   0.61 
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    22   1.9  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   3.3  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   3.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   3.3  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   4.3  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   4.3  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    20   10.0 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   10.0 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   10.0 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    20   10.0 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    20   10.0 
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    20   10.0 

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.20
 Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 10  ARVSPDSDERYAHPAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKP 69
           ++ S  S+    +P M R H  + + ++NGE ++          +      +   Y  + 
Sbjct: 189 SKSSQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRR 248

Query: 70  DRSESYQQ--MPQPRSEVWEQDRCSAREREYPSAVM 103
            R E      + + + ++W Q+R    ++E+  A M
Sbjct: 249 RRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASM 284


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
          transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.4 bits (53), Expect = 0.20
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 57 PPHHYHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREY 98
          PPHHY  P    P   +  Q MP PR   +  DR   R   Y
Sbjct: 61 PPHHYGGP----PSGGQPPQGMPYPRFPPY--DRMDIRAAGY 96


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 0.61
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 22  HPAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQ--MP 79
           +P M R H  + + ++NGE ++          +      +   Y  +  R E      + 
Sbjct: 201 YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 260

Query: 80  QPRSEVWEQDRCSAREREYPSAVM 103
           + + ++W Q+R    ++E+  A M
Sbjct: 261 ERQIKIWFQNRRMKWKKEHKMASM 284


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 0.61
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 22  HPAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQ--MP 79
           +P M R H  + + ++NGE ++          +      +   Y  +  R E      + 
Sbjct: 201 YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 260

Query: 80  QPRSEVWEQDRCSAREREYPSAVM 103
           + + ++W Q+R    ++E+  A M
Sbjct: 261 ERQIKIWFQNRRMKWKKEHKMASM 284


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 0.61
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 22  HPAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQ--MP 79
           +P M R H  + + ++NGE ++          +      +   Y  +  R E      + 
Sbjct: 157 YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 216

Query: 80  QPRSEVWEQDRCSAREREYPSAVM 103
           + + ++W Q+R    ++E+  A M
Sbjct: 217 ERQIKIWFQNRRMKWKKEHKMASM 240


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 0.61
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 22  HPAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQ--MP 79
           +P M R H  + + ++NGE ++          +      +   Y  +  R E      + 
Sbjct: 201 YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 260

Query: 80  QPRSEVWEQDRCSAREREYPSAVM 103
           + + ++W Q+R    ++E+  A M
Sbjct: 261 ERQIKIWFQNRRMKWKKEHKMASM 284


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 0.61
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 22  HPAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQ--MP 79
           +P M R H  + + ++NGE ++          +      +   Y  +  R E      + 
Sbjct: 201 YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 260

Query: 80  QPRSEVWEQDRCSAREREYPSAVM 103
           + + ++W Q+R    ++E+  A M
Sbjct: 261 ERQIKIWFQNRRMKWKKEHKMASM 284


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 5/25 (20%), Positives = 18/25 (72%)

Query: 60  HYHEPYYEKPDRSESYQQMPQPRSE 84
           H++E Y+ +P++ +  + +P+ +++
Sbjct: 93  HHNEKYFPEPEKFDPNRYLPENQAK 117


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
          transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 58 PHHYHEPYYEKPDRSESYQQMPQPRSEVW 86
          P HY   +YE P      ++ P    EV+
Sbjct: 36 PPHYSNYHYEDPYGYTGSEETPPSPQEVY 64


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
          protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 58 PHHYHEPYYEKPDRSESYQQMPQPRSEVW 86
          P HY   +YE P      ++ P    EV+
Sbjct: 36 PPHYSNYHYEDPYGYTGSEETPPSPQEVY 64


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
          protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 58 PHHYHEPYYEKPDRSESYQQMPQPRSEVW 86
          P HY   +YE P      ++ P    EV+
Sbjct: 36 PPHYSNYHYEDPYGYTGSEETPPSPQEVY 64


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 54 VVSPPHHYHEPYYEKPDRSESYQQMP 79
          +  PP  ++ P Y  P    S  Q+P
Sbjct: 45 ITYPPSDWNCPQYNAPPYMSSVLQLP 70


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 54 VVSPPHHYHEPYYEKPDRSESYQQMP 79
          +  PP  ++ P Y  P    S  Q+P
Sbjct: 36 ITYPPSDWNCPQYNAPPYMSSVLQLP 61


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 5/9 (55%), Positives = 7/9 (77%)

Query: 57  PPHHYHEPY 65
           PP H+HE +
Sbjct: 258 PPRHFHEEH 266


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 57  PPHHYHEP 64
           PPH +H+P
Sbjct: 738 PPHPHHQP 745


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 57  PPHHYHEP 64
           PPH +H+P
Sbjct: 630 PPHPHHQP 637


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 22  HPAMTRSHYEEYSYSSNGECRQ 43
           +P M R H  + + ++NGE ++
Sbjct: 201 YPWMKRVHLGQSTVNANGETKR 222


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 22  HPAMTRSHYEEYSYSSNGECRQ 43
           +P M R H  + + ++NGE ++
Sbjct: 201 YPWMKRVHLGQSTVNANGETKR 222


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 60  HYHEPYYEKPDRSESYQQMPQ 80
           H  E YY  PD+ +    +P+
Sbjct: 96  HRLEEYYPNPDKFDPDNFLPE 116


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.126    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,535
Number of Sequences: 317
Number of extensions: 1393
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 144
length of database: 114,650
effective HSP length: 51
effective length of query: 93
effective length of database: 98,483
effective search space:  9158919
effective search space used:  9158919
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)