Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001356-TA|BGIBMGA001356-PA|undefined
(144 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6) 34 0.040
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85) 28 3.4
SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33) 27 6.0
SB_7247| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 27 7.9
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 27 7.9
SB_5883| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_38679| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.6)
Length = 147
Score = 34.3 bits (75), Expect = 0.040
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 110 TRRPVTRNSNLLSAVLCLVKELDYPSLEVAEMAV 143
+R TR++N+L+AV LVKELD SLE ++ V
Sbjct: 85 SRLSETRSNNILTAVCALVKELDRESLEEVKLEV 118
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 28.7 bits (61), Expect = 2.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 58 PHHYHEPYYEKPDRSESYQQMPQ 80
PH+ H PY + D Y +MPQ
Sbjct: 724 PHYRHNPYQQHLDGFNGYAEMPQ 746
>SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 84 EVWEQDRCSAREREYPSAVMAEHRGFTRRPVTRNSNLLSAVLCLVKELDYPSLEV 138
E WE + E P V HR R+ R L S+ C ++ +L++
Sbjct: 152 EEWEAEEQENLEARQPGGVPRSHRQSRRKTRGREEGLGSSTSCATSTCEHSNLQI 206
>SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 33 YSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPY-YEKPDRSESYQQMPQ 80
Y YSS G Q PPHHY Y Y P R + PQ
Sbjct: 6 YGYSSQGY-NQYTTGPYQVGAQSQPPHHYRPAYIYNSPSR-YGFNAFPQ 52
>SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 68 KPDRSES--YQQMPQPRSEVWEQDRCSAREREYPSA 101
+P R E+ Y +P+P E+W D +R + SA
Sbjct: 235 RPTRQEAWGYTTVPEPHLEIWRDDNVESRVAQCVSA 270
>SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)
Length = 377
Score = 27.9 bits (59), Expect = 3.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 59 HHYHEPYYEKPDRSESYQQMPQP 81
H YH +YE+P+ + +P+P
Sbjct: 112 HDYHHDHYEEPEYRSLHYHLPEP 134
>SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 63 EPYYEKPDRSESYQQMPQPRSEVWEQDRCSARE 95
E K ++ES +QMP+P+ E ++D +R+
Sbjct: 459 EDVESKKKKAESKKQMPRPKEEEEDEDDADSRD 491
>SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 57 PPHHYHEPYYEKPDRSESYQQMPQPRSEVWEQD 89
P + H P Y + DR+ Y Q+ Q V+ +D
Sbjct: 596 PLNQEHRPVYHRDDRAMIYLQLNQEHRPVYHRD 628
>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
Length = 958
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 57 PPHHYHEPYYEKPDRSESYQQMPQP 81
PP Y E YY++P R + + M P
Sbjct: 30 PPELYEEAYYDQPLRGDPHIHMSAP 54
>SB_7247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 27.1 bits (57), Expect = 6.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 54 VVSPPHHYHEPYYEKPDRSESYQQMPQP 81
+++ HH+H Y+ +R +Q PQP
Sbjct: 25 IITDFHHHHHHYHHYHNRHHHHQLHPQP 52
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 63 EPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSAVMAEHRGFTRRP 113
EP E+P + E ++ P+ EQ A E + + V + G +P
Sbjct: 129 EPVEEEPKQEEPVEEEPKQEEPFEEQKEAVAEESKVDAPVAIDTSGVYEKP 179
>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 299
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 58 PHHYHEPYYEKP--DRSESYQQMPQPRS 83
PHH + +YE+ D S+SY PQ S
Sbjct: 111 PHHGTQTFYERDAYDTSKSYYSQPQTSS 138
>SB_5883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 58 PHHYHEPYYEKPDRSESYQQMPQPRSE 84
P+HYH P + + PQPR E
Sbjct: 40 PNHYHHKVPTPPPAKQPERPKPQPRQE 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.126 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,088,006
Number of Sequences: 59808
Number of extensions: 192251
Number of successful extensions: 466
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 30
length of query: 144
length of database: 16,821,457
effective HSP length: 76
effective length of query: 68
effective length of database: 12,276,049
effective search space: 834771332
effective search space used: 834771332
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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