GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001356-TA|BGIBMGA001356-PA|undefined
         (144 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-6|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated p...    33   0.060
U55374-5|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    33   0.060
U55374-4|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    33   0.060
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    33   0.060
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    31   0.24 
AC006712-7|AAK39318.2|  264|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    28   2.3  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    28   3.0  
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    27   5.2  
Z72503-5|CAI79155.1|  513|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U97013-6|AAB52337.1|  221|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z81509-5|CAI79166.1|  150|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    26   9.1  

>U55374-6|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated
           protein 2, isoform d protein.
          Length = 286

 Score = 33.5 bits (73), Expect = 0.060
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 27  RSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQMPQPRSEVW 86
           R ++  +S+S +   +Q           +  P   H  YY    RS  Y ++P P  +++
Sbjct: 176 RDYHTSHSHSHHPTSQQQQHQPMYSTSPLISPRSSHS-YYTP--RSSQYYEIPSPSPDIY 232

Query: 87  EQDRCSAREREYPSAVM 103
              R SA  R YP++ +
Sbjct: 233 PSYRGSASPRRYPTSTV 249


>U55374-5|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 33.5 bits (73), Expect = 0.060
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 27   RSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQMPQPRSEVW 86
            R ++  +S+S +   +Q           +  P   H  YY    RS  Y ++P P  +++
Sbjct: 1816 RDYHTSHSHSHHPTSQQQQHQPMYSTSPLISPRSSHS-YYTP--RSSQYYEIPSPSPDIY 1872

Query: 87   EQDRCSAREREYPSAVM 103
               R SA  R YP++ +
Sbjct: 1873 PSYRGSASPRRYPTSTV 1889



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 2    SPTRRTTVARVSPDSD-ERYAHPAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHH 60
            S  R  ++AR SP S  ERY HP   R+     S S      +           +     
Sbjct: 1634 SSPRYRSMARASPPSPAERYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRS 1693

Query: 61   YHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSAVMAEHRGFTRRPV 114
             H+P Y      +  QQ  QP  +   Q    +  + Y +     H  ++R P+
Sbjct: 1694 SHDPQYH-----QDQQQQQQPHHQQHSQHLQHSHHKTYQN-----HNQYSRSPI 1737


>U55374-4|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 33.5 bits (73), Expect = 0.060
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 27   RSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQMPQPRSEVW 86
            R ++  +S+S +   +Q           +  P   H  YY    RS  Y ++P P  +++
Sbjct: 1917 RDYHTSHSHSHHPTSQQQQHQPMYSTSPLISPRSSHS-YYTP--RSSQYYEIPSPSPDIY 1973

Query: 87   EQDRCSAREREYPSAVM 103
               R SA  R YP++ +
Sbjct: 1974 PSYRGSASPRRYPTSTV 1990



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 2    SPTRRTTVARVSPDSD-ERYAHPAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHH 60
            S  R  ++AR SP S  ERY HP   R+     S S      +           +     
Sbjct: 1735 SSPRYRSMARASPPSPAERYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRS 1794

Query: 61   YHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSAVMAEHRGFTRRPV 114
             H+P Y      +  QQ  QP  +   Q    +  + Y +     H  ++R P+
Sbjct: 1795 SHDPQYH-----QDQQQQQQPHHQQHSQHLQHSHHKTYQN-----HNQYSRSPI 1838


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 33.5 bits (73), Expect = 0.060
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 27   RSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQMPQPRSEVW 86
            R ++  +S+S +   +Q           +  P   H  YY    RS  Y ++P P  +++
Sbjct: 1917 RDYHTSHSHSHHPTSQQQQHQPMYSTSPLISPRSSHS-YYTP--RSSQYYEIPSPSPDIY 1973

Query: 87   EQDRCSAREREYPSAVM 103
               R SA  R YP++ +
Sbjct: 1974 PSYRGSASPRRYPTSTV 1990



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 2    SPTRRTTVARVSPDSD-ERYAHPAMTRSHYEEYSYSSNGECRQXXXXXXXXXXVVSPPHH 60
            S  R  ++AR SP S  ERY HP   R+     S S      +           +     
Sbjct: 1735 SSPRYRSMARASPPSPAERYGHPPRYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRS 1794

Query: 61   YHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSAVMAEHRGFTRRPV 114
             H+P Y      +  QQ  QP  +   Q    +  + Y +     H  ++R P+
Sbjct: 1795 SHDPQYH-----QDQQQQQQPHHQQHSQHLQHSHHKTYQN-----HNQYSRSPI 1838


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 63   EPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSAVMAEHRGFTRRPVTRNS 118
            E YYE P ++ S      P     +     +R +  P  +   H  F RRP +RNS
Sbjct: 1378 EGYYEPPVQTYSPVPPRYPTLRRVDDSPLRSRAKSLPRIISPRHEHFVRRPHSRNS 1433


>AC006712-7|AAK39318.2|  264|Caenorhabditis elegans Hypothetical
           protein Y119C1B.9 protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 74  SYQQMPQPRSEVW---EQDRCSAREREYPSAVMAEHRGFTRRPVTRNSN 119
           S+  +PQP    W     D  +A+ RE+P A   EH+   +  +   SN
Sbjct: 64  SFTSLPQPVQIQWMFRPSDSVNAQWREFPCAKKEEHKNCQKEEIIVESN 112


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 67  EKPDRSESYQQMPQPR-SEVWEQDRCSAREREYPSAVMAEHRGFTRRPVTRNSNLLSAVL 125
           ++P  S    ++ + R S+ +EQ   S  E E PS    +  G+ R  V ++  +  ++ 
Sbjct: 4   KRPGGSSFQPEVKRKRESDEFEQCYVSRFENELPSVPTIDKTGWARPAVDKDLGISKSIA 63

Query: 126 CLVKELD 132
           C + E++
Sbjct: 64  CQILEVE 70


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 58  PHHYHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSA 101
           P    + Y E+P   ++YQQ  Q + +  +Q       ++YP A
Sbjct: 152 PQQNPQQYQEQPQSYQTYQQPQQQQPQYGQQQNPQQFGQQYPGA 195


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
            C26C6.1a protein.
          Length = 1883

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/37 (24%), Positives = 22/37 (59%)

Query: 59   HHYHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSARE 95
            HH H+ +Y++  +     QM  P++ +++Q   S+++
Sbjct: 1699 HHPHQQHYQQGGQPHPQMQMGPPQNGMFQQGSSSSQQ 1735


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
            protein C26C6.1a protein.
          Length = 1883

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/37 (24%), Positives = 22/37 (59%)

Query: 59   HHYHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSARE 95
            HH H+ +Y++  +     QM  P++ +++Q   S+++
Sbjct: 1699 HHPHQQHYQQGGQPHPQMQMGPPQNGMFQQGSSSSQQ 1735


>Z72503-5|CAI79155.1|  513|Caenorhabditis elegans Hypothetical
           protein C26C6.1b protein.
          Length = 513

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/37 (24%), Positives = 22/37 (59%)

Query: 59  HHYHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSARE 95
           HH H+ +Y++  +     QM  P++ +++Q   S+++
Sbjct: 329 HHPHQQHYQQGGQPHPQMQMGPPQNGMFQQGSSSSQQ 365


>U97013-6|AAB52337.1|  221|Caenorhabditis elegans Hypothetical
          protein F28H1.1 protein.
          Length = 221

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 54 VVSPPHHYHEPYYEKP 69
          V  PP +YH PY  KP
Sbjct: 47 VAGPPRNYHHPYEVKP 62


>Z81509-5|CAI79166.1|  150|Caenorhabditis elegans Hypothetical
           protein F21A3.8 protein.
          Length = 150

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/55 (27%), Positives = 20/55 (36%)

Query: 57  PPHHYHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSAVMAEHRGFTR 111
           PP  YH  +   P  +      P+P SE  E    +  E E    +    R F R
Sbjct: 54  PPASYHTEHQSTPSHTHKKYIDPEPYSEQDEHTSAAPHEEEEELPMERLKRAFGR 108


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/67 (20%), Positives = 23/67 (34%)

Query: 29  HYEEYSYSSNGECRQXXXXXXXXXXVVSPPHHYHEPYYEKPDRSESYQQMPQPRSEVWEQ 88
           H  +YS        +          +  PP  +H P    P  +E+ Q  P P  +    
Sbjct: 74  HLAKYSERRASYHVESSSYIHSSQQIQHPPQQHHPPPPSPPPVAETIQHQPHPSQQQPST 133

Query: 89  DRCSARE 95
              S+R+
Sbjct: 134 TTISSRQ 140



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 58  PHHYHEPYYEKPDRSESYQQMPQPRSEVWEQDRCSAREREYPSAVMAEH 106
           P   H+ +         Y +  +P   VW     S +ERE PS+V+A++
Sbjct: 348 PRPIHQNFSASEIELHHYSRNAEPSVVVWPP--VSEKERERPSSVLAKN 394


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.126    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,642,739
Number of Sequences: 27539
Number of extensions: 135633
Number of successful extensions: 372
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 19
length of query: 144
length of database: 12,573,161
effective HSP length: 75
effective length of query: 69
effective length of database: 10,507,736
effective search space: 725033784
effective search space used: 725033784
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)