Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001354-TA|BGIBMGA001354-PA|undefined
         (260 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25440.1 68414.m03159 zinc finger (B-box type) family protein...    33   0.25 
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    31   1.0  
At1g61600.1 68414.m06941 expressed protein                             30   1.8  
At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related...    29   4.1  
At3g19970.1 68416.m02527 expressed protein                             29   4.1  
At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase fa...    28   5.5  
At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro...    28   5.5  
At5g56660.1 68418.m07073 IAA-amino acid hydrolase 2 (ILL2) ident...    28   7.2  
At4g24110.1 68417.m03461 expressed protein                             28   7.2  
At5g01890.1 68418.m00108 leucine-rich repeat transmembrane prote...    27   9.6  
At1g64060.1 68414.m07256 respiratory burst oxidase protein F (Rb...    27   9.6  
At1g19600.1 68414.m02441 pfkB-type carbohydrate kinase family pr...    27   9.6  

>At1g25440.1 68414.m03159 zinc finger (B-box type) family protein
           similar to zinc finger protein GI:3618318 from [Oryza
           sativa]
          Length = 417

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 28  SDHQVNEEEIWKDAVDGDSCGVDINEWFGDNQAWCHQPRAEESAISPWGGEIRPHSPAR- 86
           S H+ +EEE+ K+      C V + E    N          +S IS WGG+  P S    
Sbjct: 261 SSHKTSEEEVMKNVESSGECVVKVKEEEHKNVLMLR--LNYDSVISTWGGQGPPWSSGEP 318

Query: 87  LHRELDAELW 96
             R++D   W
Sbjct: 319 PERDMDISGW 328


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
           transcription factor (HUA2) - Arabidopsis thaliana,
           EMBL:AF116556
          Length = 1445

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 221 RRAKICATNKDDQDTDPKNIIYYKIRNQLICGSTPPRS 258
           RR  +C  + DD D DPK  ++  + N  I  +  P+S
Sbjct: 450 RRRAVCIYDDDDDDEDPKTPVHGGLSNIPIASTDAPKS 487


>At1g61600.1 68414.m06941 expressed protein 
          Length = 421

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 187 SVVSLALLRNACKQGGW-GGGAVVKRLEEYEMLK-CRR 222
           S V +  +R   ++GGW GGG  V R+E  E ++ CRR
Sbjct: 333 SFVVVERMRRVMEEGGWVGGGRKVVRVERDEPIRVCRR 370


>At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related
           protein, putative similar to kinesin like protein
           GB:CAB10194 from [Arabidopsis thaliana]
          Length = 1313

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 140 SLATDRSSLARLTSRQLAAGVNRHAKTLSMLLKETALR 177
           +L+T +S    + +RQLAA ++R  K L    + TALR
Sbjct: 738 ALSTKKSEAFPVPTRQLAASLHRGMKLLDSYRQSTALR 775


>At3g19970.1 68416.m02527 expressed protein
          Length = 434

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/74 (24%), Positives = 36/74 (48%)

Query: 111 ADSLAEFTRGAHVAPHSSELDLTDEGCTCSLATDRSSLARLTSRQLAAGVNRHAKTLSML 170
           A  LA+ +  + +      +DL     +CSLAT  +SL+ L S   +A + + +K ++  
Sbjct: 67  ASKLADLSFVSRICVPVPNVDLLASNPSCSLATSVTSLSALRSVYQSAELAKASKPVAFT 126

Query: 171 LKETALRDRMSVTW 184
           +  + +   +S  W
Sbjct: 127 IGASLVVPDISYRW 140


>At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase
           family protein similar to phosphatidylinositol 4-kinase
           type-II beta [Homo sapiens] GI:20159767; contains Pfam
           profile PF00454: Phosphatidylinositol 3- and 4-kinase
          Length = 630

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 133 TDEGCTCSLATDRSSLARLTSRQLAAGVNRHAKTLSMLLKETALRDRMSVTWFHSVVSLA 192
           T+ GC   L  DRS  A    R+L   +N   +  S+   +  L++   +T   S   L 
Sbjct: 47  TETGCVLGLELDRSDNAHTVKRKLQVALNFPIEESSLTFGDLVLKN--DLTAVRSDSPLL 104

Query: 193 LLRN 196
           L RN
Sbjct: 105 LTRN 108


>At1g04880.1 68414.m00485 high mobility group (HMG1/2) family
           protein / ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to SP|O15347|HMG4_HUMAN High
           mobility group protein 4 (HMG-4) (High mobility group
           protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam
           profiles PF00505: HMG (high mobility group) box,
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 448

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 6   VCNDVPEKMLRERASSAENWQNSDHQVNEEEIWKDAVDGDSCGVDINEWFGDNQAWCHQP 65
           + N VP   L++R    +N   ++  +  +E+ +D  +GDS G        D+Q+    P
Sbjct: 339 ISNAVP---LQQRLPE-QNVDMAEADLPIDEVEEDDEEGDSSGSSGESEPHDDQSIETDP 394

Query: 66  RAEESAISPWGGEIRPH 82
             EE +++P G  + P+
Sbjct: 395 ELEEPSLNPSGPNLNPN 411


>At5g56660.1 68418.m07073 IAA-amino acid hydrolase 2 (ILL2)
           identical to IAA-amino acid hydrolase homolog 2
           precursor [Arabidopsis thaliana] SWISS-PROT:P54970
          Length = 439

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 116 EFTRGAHVAP-HSSELDLTDEGCTCSLATDRSSLARLTSRQLAAGVNRHAKTLSMLLKET 174
           +F+  A   P H S L + DE  T   A+  S L R+    L  G   HA      LKE 
Sbjct: 369 DFSYFAETIPGHFSLLGMQDE--TNGYASSHSPLYRINEDVLPYGAAIHASMAVQYLKEK 426

Query: 175 ALRDRMSVTWFH 186
           A   + SV+ FH
Sbjct: 427 A--SKGSVSGFH 436


>At4g24110.1 68417.m03461 expressed protein
          Length = 250

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 48 GVDINEWFGDNQAWCHQPRAEESAISPWGGEIRPHSPA--RLHR 89
          G+    +  D+    + PR  E+A    G +IRP SPA   LHR
Sbjct: 27 GLPTRGFLPDSLTLLYPPRINEAAFELDGSKIRPDSPAFVTLHR 70


>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           (LRPKm1) - Malus domestica, EMBL:AF053127
          Length = 967

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 136 GCTCSLATDRSSLARLTSRQLAAGVNRHAKTLSML 170
           GCTC  AT+R S  RL +  L+  + R    L  L
Sbjct: 60  GCTCDPATNRVSELRLDAFSLSGHIGRGLLRLQFL 94


>At1g64060.1 68414.m07256 respiratory burst oxidase protein F
           (RbohF) (RbohAp108) / NADPH oxidase identical to
           cytochrome b245 beta chain homolog RbohAp108
           [GI:2654868], respiratory burst oxidase protein F
           [gi:3242456], from Arabidopsis thaliana
          Length = 944

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 131 DLTDE--GCTCSLATDRSSLARLTSRQLAAGVNRHAKTLSMLLKETALRDRMSVTWFHSV 188
           D++D+  G    ++  RS   + TS       ++  K  ++   +   ++    +W  S 
Sbjct: 72  DISDDNTGIMTPVSISRSPTMKRTSSNRFRQFSQELKAEAVAKAKQLSQELKRFSWSRSF 131

Query: 189 V-SLALLRNACKQGGWGGGAVVKRLEEYEMLKCRRAKICATNKDDQ 233
             +L     A  Q G  GG +V    E   L+ +RA++  T    Q
Sbjct: 132 SGNLTTTSTAANQSGGAGGGLVNSALEARALRKQRAQLDRTRSSAQ 177


>At1g19600.1 68414.m02441 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 355

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 112 DSLAEFTRGAHVAPHSSELDLTDEGCTCSLATDRSSLARLTSRQLAAGVNRHAKTLSMLL 171
           D  AE  RG   A   + L+     C  ++ T  S        +    ++   +T++   
Sbjct: 229 DEAAELLRGEQEAGPEAALEFLGRHCRWAVVTLGSKGCIAKHDKEVVHISAIGETVAT-- 286

Query: 172 KETALRDRMSVTWFHSVVSLALLRNACKQGGWGGGAVVKRL 212
             T   D  +  + + ++    L   CK G   GG+V++ L
Sbjct: 287 DATGAGDLFASGFLYGLIKGLSLEECCKVGSCSGGSVIRAL 327


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.130    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,033,986
Number of Sequences: 28952
Number of extensions: 231710
Number of successful extensions: 572
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 13
length of query: 260
length of database: 12,070,560
effective HSP length: 80
effective length of query: 180
effective length of database: 9,754,400
effective search space: 1755792000
effective search space used: 1755792000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)