GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001354-TA|BGIBMGA001354-PA|undefined
         (260 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D56C3F Cluster: PREDICTED: similar to CG32418-PA...    33   5.5  
UniRef50_Q8C987 Cluster: 7 days neonate cerebellum cDNA, RIKEN f...    33   7.3  
UniRef50_UPI0000EBDB9C Cluster: PREDICTED: hypothetical protein;...    33   9.6  
UniRef50_UPI0000EB0F4A Cluster: RAD21-like 1 (S. pombe); n=5; Eu...    33   9.6  
UniRef50_Q8RWD0 Cluster: Zinc finger protein CONSTANS-LIKE 16; n...    33   9.6  

>UniRef50_UPI0000D56C3F Cluster: PREDICTED: similar to CG32418-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG32418-PA - Tribolium castaneum
          Length = 210

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 23  ENWQNSDHQVNEEEIWKDAVDGDSCGVDINEWFGDNQAWCHQPRAEESAISPWGGEIRPH 82
           E +++ D  V  EE+  D +  +S       W G NQ  C     EES +S   G     
Sbjct: 91  EEYEDDDATVRIEELSTDVIAKES------NWIGANQPICEDVEQEESEVSEVPGMELKK 144

Query: 83  SPARLHRELDAE 94
             ++++R+ D+E
Sbjct: 145 KDSKVNRKFDSE 156


>UniRef50_Q8C987 Cluster: 7 days neonate cerebellum cDNA, RIKEN
           full-length enriched library, clone:A730018C14
           product:hypothetical protein, full insert sequence; n=1;
           Mus musculus|Rep: 7 days neonate cerebellum cDNA, RIKEN
           full-length enriched library, clone:A730018C14
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 240

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 122 HVAPHSSELDLTDEGCTCSLATDRSSLARLTSRQLAAGVNRHAKTLSMLLKETALRDRMS 181
           H      ++ L +EG         + ++ + S  +     R  K        TA  DR  
Sbjct: 5   HTFAEEEQVSLAEEGQVSRAEVQVTCVSTVLSLVIRHSFQRQQKASGRGDSFTA--DRNP 62

Query: 182 VTWFHSVVSLALLRNACKQGGWG 204
            +WFHSV+ + L R  C++ G G
Sbjct: 63  TSWFHSVIGMPLDRWCCREVGGG 85


>UniRef50_UPI0000EBDB9C Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 500

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 119 RGAHVAPHSSELDLTDEGCTCSLATD--RSSLARLTSRQLAAGVNRHAKTLSMLLKETAL 176
           RG HVAP  S +         S +    R S  RLT  +   G  RH+  LS    E+ L
Sbjct: 331 RGNHVAPQDSGVSWAGVRAEQSPSAPGIRPSTPRLTQAEEGGGPRRHSPALSRCALESVL 390

Query: 177 RD 178
           RD
Sbjct: 391 RD 392


>UniRef50_UPI0000EB0F4A Cluster: RAD21-like 1 (S. pombe); n=5;
           Eutheria|Rep: RAD21-like 1 (S. pombe) - Canis familiaris
          Length = 631

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 10  VPEKMLRERASSAENWQNSDHQVNEEEIWKDAVDGDSCG--VDINEWFGDNQAW 61
           + ++ +RE  +   N    +  +N+ + WKD ++G  C    DIN+ F   + W
Sbjct: 398 IQKESVREEEAFFCNNHIPNQDLNQSKTWKDVINGSKCSSHEDINKNFNSERTW 451


>UniRef50_Q8RWD0 Cluster: Zinc finger protein CONSTANS-LIKE 16; n=4;
           Arabidopsis|Rep: Zinc finger protein CONSTANS-LIKE 16 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 417

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 28  SDHQVNEEEIWKDAVDGDSCGVDINEWFGDNQAWCHQPRAEESAISPWGGEIRPHSPAR- 86
           S H+ +EEE+ K+      C V + E    N          +S IS WGG+  P S    
Sbjct: 261 SSHKTSEEEVMKNVESSGECVVKVKEEEHKNVLMLR--LNYDSVISTWGGQGPPWSSGEP 318

Query: 87  LHRELDAELW 96
             R++D   W
Sbjct: 319 PERDMDISGW 328


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.130    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,493,537
Number of Sequences: 1657284
Number of extensions: 10453236
Number of successful extensions: 23904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23903
Number of HSP's gapped (non-prelim): 5
length of query: 260
length of database: 575,637,011
effective HSP length: 99
effective length of query: 161
effective length of database: 411,565,895
effective search space: 66262109095
effective search space used: 66262109095
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 71 (32.7 bits)