GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001354-TA|BGIBMGA001354-PA|undefined
         (260 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.8  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    25   8.3  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 146  SSLARLTSRQLAAGVNRHAKTLSMLLKETALRDRMSVTWFH 186
            + LARL SR+  A   R++K +  LL  T+L+      W +
Sbjct: 3480 NDLARLCSRKTLAPRPRYSKIVRQLLINTSLKKDTKEYWLN 3520


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 206 GAVVK--RLEEYEMLK-CRRAKICATNKDDQDTDPKNIIYYKI 245
           G V+K    E+Y+ +  C+    C T   D   +P +II++KI
Sbjct: 363 GEVIKFSDFEKYKSVDACKSVGKCKTKGKDYTVEPGDIIFWKI 405


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,707
Number of Sequences: 5004
Number of extensions: 40361
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 3
length of query: 260
length of database: 2,362,478
effective HSP length: 71
effective length of query: 189
effective length of database: 2,007,194
effective search space: 379359666
effective search space used: 379359666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)