GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001354-TA|BGIBMGA001354-PA|undefined
         (260 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1081 - 27447128-27447550                                         30   2.1  
11_06_0509 - 24411655-24411990                                         29   3.7  
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    28   6.6  
04_04_0537 + 26079926-26079994,26080317-26080500,26081866-260839...    28   6.6  
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     28   8.7  

>06_03_1081 - 27447128-27447550
          Length = 140

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 192 ALLRNACKQGGWGGGAVVK---RLEEYEMLKCRRAKICATNKDDQDTDPKNIIYY 243
           ALLR A ++ G+G    ++    + ++  L  R +   A + DD D D   ++YY
Sbjct: 86  ALLRRAAQEYGYGHPGALRIPCPVADFHQLLLRLSAAAAGDGDDDDEDGGGLVYY 140


>11_06_0509 - 24411655-24411990
          Length = 111

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 179 RMSVTWFHSVVSLALLRNACKQGGWGG--GAVVKRLEEYEMLKCRRAKICATNKDDQDTD 236
           R+S+    + +++   R+A K+G  G   G   +R  E E    RR  + A   DD D D
Sbjct: 23  RVSIVGRVTPLTMRARRSAWKEGSCGEPKGKRRQRAREPEAAAARRGCVVAAADDDDDQD 82

Query: 237 PKNIIY 242
             N I+
Sbjct: 83  DDNWIW 88


>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 137 CTCSLATDRSSLARLTSRQLAAGVNRHAKTLSM 169
           CTCS    R   +RLT+R     V+ ++++ SM
Sbjct: 30  CTCSSPPTRDKFSRLTTRTTIFQVSNYSRSTSM 62


>04_04_0537 +
           26079926-26079994,26080317-26080500,26081866-26083910,
           26084323-26084424,26084566-26084622
          Length = 818

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 17  ERASSAEN-WQNSDHQVNEEEIWKDAVDGDSCGVDINEW 54
           ER    EN W+ ++H   + E  + ++ GD CG+  +E+
Sbjct: 386 ERQPPTENIWEETEHLKEKTEHNQKSLKGDQCGISGSEY 424


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 148 LARLTSRQLAAGVNRHAKTLSMLLKETALRDR 179
           + R   R LA+GV  +A TL++L+K  A  DR
Sbjct: 159 VVRTYDRMLASGVTPNAYTLAVLVKGLAASDR 190


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.130    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,785,859
Number of Sequences: 37544
Number of extensions: 307227
Number of successful extensions: 884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 6
length of query: 260
length of database: 14,793,348
effective HSP length: 81
effective length of query: 179
effective length of database: 11,752,284
effective search space: 2103658836
effective search space used: 2103658836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)