GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001354-TA|BGIBMGA001354-PA|undefined
         (260 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)                       29   2.9  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    29   2.9  
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)          28   8.8  
SB_43041| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-10)          28   8.8  
SB_31201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 136 GCTCSLATDRSSLARLTSRQLAAGVNRHAKTLS-MLLKETA--LRDRMSVTWFHSVVSLA 192
           GCT ++ +D   L R+T+R L     + A TLS   LKETA  L + + V   H    L 
Sbjct: 691 GCTVTVESDHKPLERITTRNLHQ--MQLADTLSRSYLKETAETLIEELEVNEVHLTAHLP 748

Query: 193 LLRN 196
           + R+
Sbjct: 749 MSRD 752


>SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)
          Length = 487

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 23  ENWQNSDHQVNEEEIWKDAVDGDSCGVD--INEWFGDNQAWCHQP 65
           +N ++SD    +E++  D  DGD  G D  +N   G+ Q W H P
Sbjct: 294 DNDEDSDEDDGDEDVDDDNGDGDYEGGDDGMNGDLGNYQLWLHLP 338


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 116  EFTRGAHVAPHSSELDLTDEGCTCSLATDRSSLARLTSRQLAA 158
            EFT  A V P SS    TD  CTC  +   ++  R+    L+A
Sbjct: 2102 EFTNPAFVLPSSSSPTDTDPVCTCEASVSLTTHKRIEIDSLSA 2144


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 174 TALRDRMSVTWFHSVVSLALLRNACKQGGW--GGGAVVKRLEEYEM 217
           TALRD +S +  H  +  + LRN   +G W   GG +V R+    M
Sbjct: 46  TALRDYISSSLLHGTMKTSGLRNE-NEGNWNAAGGGLVLRMTVLRM 90


>SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)
          Length = 265

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 215 YEMLK--CRRAKICATNKDDQDTDPKNIIYYKIRNQLICGSTP 255
           Y+M K  C+R K+   N   Q    +N +Y  IRN   C   P
Sbjct: 60  YDMKKGRCKRMKVTHVNMRKQLVKMENSVYADIRNGKGCADNP 102


>SB_43041| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-10)
          Length = 234

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 215 YEMLK--CRRAKICATNKDDQDTDPKNIIYYKIRNQLICGSTP 255
           Y+M K  C+R K+   N   Q    +N +Y  IRN   C   P
Sbjct: 60  YDMKKGRCKRMKVTHVNMRKQLVKMENSVYADIRNGKGCADNP 102


>SB_31201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 72  ISPWGGEIRPHSPARLHRELDAELWKYKTEXXXXXXXXXADSLAEFTRGAHVAPHSSELD 131
           ++ WGG+ R   P R++  L   L   K                 F+ G+        L 
Sbjct: 1   MTAWGGKSR--RPLRVNYTLTGHLSSTKGRLEKHKGAGFYRQHL-FSNGSRKHRTHMTLC 57

Query: 132 LTDEGCTCSLATDRSS--LARLTSR---QLAAGVNRHAKTLSMLLKETALRDRMSVTWFH 186
           +TD     +L   R++  LA + SR   +LA  ++R+A  L+++L   A+R  + ++   
Sbjct: 58  ITDVKLRLALILSRNAVRLALILSRNAVRLALILSRNAVRLALILSRNAIRRALILSRNA 117

Query: 187 SVVSLALLRNACK 199
             ++L L RNA +
Sbjct: 118 VSIALILSRNAVR 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.130    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,780,040
Number of Sequences: 59808
Number of extensions: 340416
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 7
length of query: 260
length of database: 16,821,457
effective HSP length: 81
effective length of query: 179
effective length of database: 11,977,009
effective search space: 2143884611
effective search space used: 2143884611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)