GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001354-TA|BGIBMGA001354-PA|undefined
         (260 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical
           protein C53D5.5 protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 236 DPKNIIYYKIRN-QLICGSTPPRSLA 260
           D KN+IY K++N + +CG  PP   A
Sbjct: 332 DSKNVIYTKLKNGRGVCGPPPPSGSA 357


>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
           protein F54C4.3 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 113 SLAEFTRGAHVAPHSSELDLTDEGCTCSLATDRSSLARLTSRQLAAGVNRHAKTLSMLLK 172
           SL+   R  H  P   E D    G           L R+T++QL  G  +  KT+   + 
Sbjct: 35  SLSAHKRHRHPRPEGQEDDKKPRGRPKKYEDSPVPLQRVTTKQLLGG-RKRPKTIVECVD 93

Query: 173 ETALRDRMSVTWFHSV 188
           ++A+R     +  H +
Sbjct: 94  DSAIRTDKEASRLHGL 109


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.130    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,240,101
Number of Sequences: 27539
Number of extensions: 237199
Number of successful extensions: 589
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 2
length of query: 260
length of database: 12,573,161
effective HSP length: 80
effective length of query: 180
effective length of database: 10,370,041
effective search space: 1866607380
effective search space used: 1866607380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)