Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001353-TA|BGIBMGA001353-PA|IPR005052|Legume-like lectin
         (280 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07675.1 68417.m01204 hypothetical protein                          29   2.6  
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ...    29   3.5  
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ...    29   3.5  
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ...    29   4.6  
At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family pr...    28   8.0  

>At4g07675.1 68417.m01204 hypothetical protein
          Length = 167

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 66  KEHPDEVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDLNKKVDE 114
           +E  D   D+D  FD WFE+D    +R  F   + + D   ++ K  DE
Sbjct: 35  QEPNDHHHDEDQTFDQWFETDDFANIRDSFLCLSDLVDA-PEVQKPNDE 82


>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1072

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 71  EVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLR 106
           EV      FD+WF+  G+ + +++ Q   Q+H VLR
Sbjct: 371 EVFSSAETFDEWFQISGENDQQEVVQ---QLHKVLR 403


>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1069

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 71  EVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLR 106
           EV      FD+WF+  G+ + +++ Q   Q+H VLR
Sbjct: 371 EVFSSAETFDEWFQISGENDQQEVVQ---QLHKVLR 403


>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1055

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 79  FDDWFESDGQRELRQIFQGQAQIHDVLR 106
           FD+WF+  G+ + +++ Q   Q+H VLR
Sbjct: 374 FDEWFQISGENDQQEVVQ---QLHKVLR 398


>At5g53210.1 68418.m06614 basic helix-loop-helix (bHLH) family
           protein contains similarity to helix-loop-helix
           DNA-binding protein
          Length = 294

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 65  RKEHPDEVRDKDGEFDDWFESDGQRELRQI 94
           RKE  +E  D DGE ++  + DGQ+++  +
Sbjct: 76  RKEEDEEEEDGDGEAEEDNKQDGQQKMSHV 105


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.135    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,393,605
Number of Sequences: 28952
Number of extensions: 128367
Number of successful extensions: 328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 5
length of query: 280
length of database: 12,070,560
effective HSP length: 80
effective length of query: 200
effective length of database: 9,754,400
effective search space: 1950880000
effective search space used: 1950880000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)