GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001353-TA|BGIBMGA001353-PA|IPR005052|Legume-like lectin
         (280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0367 - 16840732-16843428,16844425-16844760                       31   1.0  
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281...    30   2.4  
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592...    29   5.5  

>11_04_0367 - 16840732-16843428,16844425-16844760
          Length = 1010

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 70  DEVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDL 108
           DE  D D   + +F+   QR   Q+F G   +HD++ DL
Sbjct: 477 DERNDGDKNGNRYFDELVQRSFLQLFSGSCIMHDLIHDL 515


>05_01_0360 +
           2814139-2814627,2815203-2815334,2815480-2815583,
           2816180-2816292,2818409-2818506,2818636-2818815,
           2818893-2819114,2819270-2819404,2819489-2819771,
           2819858-2819931,2820164-2820384,2820463-2820550,
           2820651-2820744,2820827-2821015,2821369-2821400,
           2821542-2821621,2821718-2821807,2821911-2821980,
           2822240-2822285,2822370-2822428,2822588-2822753,
           2822929-2823107,2823186-2823392,2823529-2823633,
           2823701-2823703
          Length = 1152

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)

Query: 79  FDDWFESDGQRELRQIFQGQAQIHDVLR 106
           FDDWF+  G+ +  ++ Q   Q+H VLR
Sbjct: 470 FDDWFQISGENDQHEVVQ---QLHKVLR 494


>01_04_0010 -
           15058175-15058195,15058320-15058430,15059031-15059246,
           15059327-15059505,15059655-15059820,15059914-15059972,
           15060065-15060107,15060285-15060354,15060458-15060547,
           15060621-15060742,15060777-15060808,15060876-15061064,
           15061148-15061241,15061325-15061412,15061498-15061718,
           15061924-15061997,15062081-15062363,15062455-15062589,
           15062721-15062942,15063029-15063208,15063305-15063402,
           15063522-15063634,15064156-15064259,15064400-15064522,
           15064857-15065192
          Length = 1122

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 79  FDDWFESDGQRELRQIFQGQAQIHDVLR 106
           FD+WF+  G+ + +++ Q   Q+H VLR
Sbjct: 416 FDEWFQISGENDQQEVVQ---QLHKVLR 440


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.135    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,218,092
Number of Sequences: 37544
Number of extensions: 147657
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 3
length of query: 280
length of database: 14,793,348
effective HSP length: 81
effective length of query: 199
effective length of database: 11,752,284
effective search space: 2338704516
effective search space used: 2338704516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)