GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001353-TA|BGIBMGA001353-PA|IPR005052|Legume-like lectin
         (280 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18398| Best HMM Match : Lectin_leg-like (HMM E-Value=2.8026e-45)    32   0.60 
SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 30   2.4  
SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 30   2.4  
SB_50029| Best HMM Match : TP2 (HMM E-Value=0.15)                      30   2.4  
SB_48876| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                30   2.4  
SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_18204| Best HMM Match : Phage_integr_N (HMM E-Value=0.24)           28   7.4  
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_35438| Best HMM Match : GXGXG (HMM E-Value=1.9)                     28   9.8  
SB_14909| Best HMM Match : Spb1_C (HMM E-Value=0)                      28   9.8  
SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)                   28   9.8  

>SB_18398| Best HMM Match : Lectin_leg-like (HMM E-Value=2.8026e-45)
          Length = 414

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 251 ILLVAAMQLALMFIYALYKERKEAQAKKFF 280
           + LV A Q+A++  Y  Y+ +KEA AKKFF
Sbjct: 386 VFLVVA-QIAMLIGYITYRNQKEAAAKKFF 414


>SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 535

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%)

Query: 65  RKEHPDEVRDKDGEFDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 119
           R +  D++ D    F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 436 RNDDTDKILDA---FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 492


>SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 406

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%)

Query: 65  RKEHPDEVRDKDGEFDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 119
           R +  D++ D    F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 338 RNDDTDKILDA---FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 394


>SB_50029| Best HMM Match : TP2 (HMM E-Value=0.15)
          Length = 303

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%)

Query: 65  RKEHPDEVRDKDGEFDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 119
           R +  D++ D    F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 235 RNDDTDKILDA---FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 291


>SB_48876| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 320

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 8/60 (13%)

Query: 65  RKEHPDEVRDKDGEFDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 119
           R +  D++ D    F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 252 RNDDTDKILDA---FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 308


>SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 82  WFESDGQRELRQIFQGQAQIHDVLRDLNKKVDEVIGKQMN 121
           WF  DG R     +  +A +H ++RD   +  E I K ++
Sbjct: 835 WFPYDGTRSHSLAYDRRASLHRIVRDREMEAFECIEKSLS 874


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 95  FQGQAQI-HDVLRDLNKKVDEVIGKQMNS 122
           F+GQ Q+  + LR+L K + EV+GK +N+
Sbjct: 266 FEGQGQVTREDLRNLVKSIYEVLGKSVNN 294


>SB_18204| Best HMM Match : Phage_integr_N (HMM E-Value=0.24)
          Length = 285

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 87  GQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 119
           G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 5   GRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 40


>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1062

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 65  RKEHPDEVRDKDGEFDDWFES--DGQRELRQIFQGQAQIHDVLRD--LNKKVDEVIGKQ 119
           R +  D++ D    F  W +    G+RELR   Q  AQ+H +++D     ++D ++ K+
Sbjct: 249 RNDDTDKILDA---FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDDPDELRIDSILNKK 304


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 65  RKEHPDEVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDLNKKVD 113
           R++  D  RD+D +  D    DG+RE  +    + +  D+L   NK VD
Sbjct: 352 REQRRDRFRDRDEKGSDLERRDGRREAMKASNRENRTADLLE--NKTVD 398


>SB_35438| Best HMM Match : GXGXG (HMM E-Value=1.9)
          Length = 602

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 73  RDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDLNKKVDEVIGKQMNSMSMLTAV 129
           R+ D  + ++F+S G   L ++ +  A  HD+  D+ K   E  GK + S+  +  V
Sbjct: 362 RNIDDTYCEYFDSFGIGVLNKVDEIAAH-HDICYDMGKSKGECDGKMVESLDRIPYV 417


>SB_14909| Best HMM Match : Spb1_C (HMM E-Value=0)
          Length = 437

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 70  DEVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDLNKKVDEVIGKQMN 121
           +E      +   WFE D  + L        +I  +L+D  KK  ++IG+  N
Sbjct: 116 EEKESASAKTSKWFEKDIFQGLEDDVDEDVEISQMLQDYKKKGGKLIGEDEN 167


>SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)
          Length = 1223

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 73  RDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDLNKKVDEVIGKQMNSMSMLTAV 129
           R+ D  + ++F+S G   L ++ +  A  HD+  D+ K   E  GK + S+  +  V
Sbjct: 857 RNIDDTYCEYFDSFGIGVLNKVDEIAAH-HDICYDMGKSKGECDGKMVESLDRIPYV 912


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.135    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,937,375
Number of Sequences: 59808
Number of extensions: 171530
Number of successful extensions: 407
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 404
Number of HSP's gapped (non-prelim): 13
length of query: 280
length of database: 16,821,457
effective HSP length: 81
effective length of query: 199
effective length of database: 11,977,009
effective search space: 2383424791
effective search space used: 2383424791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)