GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001353-TA|BGIBMGA001353-PA|IPR005052|Legume-like lectin
         (280 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-7|CAB03169.1|  492|Caenorhabditis elegans Hypothetical pr...    45   5e-05
DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like...    45   5e-05
Z78064-6|CAB01511.1|  473|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z81586-6|CAB04696.1|  484|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>Z81097-7|CAB03169.1|  492|Caenorhabditis elegans Hypothetical
           protein K07A1.8 protein.
          Length = 492

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 36  QQISSDEQQKLSXXXXXXXXXXXXXXXXXRKEHPDEVRDKDGEFDD--WFESDGQRELRQ 93
           +QI   E+QK                   +++HPD+V++ D E+D   ++E    RELR 
Sbjct: 261 EQIPQQEKQKYDEEFERQMKEYEQERAKFKEQHPDKVKEDD-EYDPNKYYEDATARELRL 319

Query: 94  IFQGQAQIHDVLRDLNKKVDEVIGKQMNSMS 124
           I++ Q  IH V++++++++ ++   Q + ++
Sbjct: 320 IYESQNAIHQVMQNMDQRLAQIQQAQTSGVA 350


>DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like
           protein protein.
          Length = 492

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 36  QQISSDEQQKLSXXXXXXXXXXXXXXXXXRKEHPDEVRDKDGEFDD--WFESDGQRELRQ 93
           +QI   E+QK                   +++HPD+V++ D E+D   ++E    RELR 
Sbjct: 261 EQIPQQEKQKYDEEFERQMKEYEQERAKFKEQHPDKVKEDD-EYDPNKYYEDATARELRL 319

Query: 94  IFQGQAQIHDVLRDLNKKVDEVIGKQMNSMS 124
           I++ Q  IH V++++++++ ++   Q + ++
Sbjct: 320 IYESQNAIHQVMQNMDQRLAQIQQAQTSGVA 350


>Z78064-6|CAB01511.1|  473|Caenorhabditis elegans Hypothetical
           protein F57B1.2 protein.
          Length = 473

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/50 (26%), Positives = 28/50 (56%)

Query: 65  RKEHPDEVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDLNKKVDE 114
           + +H +++ +   E    ++     EL+QI   QA+I D L+ + K++D+
Sbjct: 180 KTDHLEKLLENVLEHSKGWKESAIEELKQIKLWQAEISDALQQMKKEIDD 229


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 68   HPDEVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDLNKKVDEVIGKQMNSMSMLT 127
            HP  VR +   +DD++ +  Q+E   +    +++     D++  VD+++GK M+  + L+
Sbjct: 2872 HPKPVRTET-HYDDYYITSLQQE--DLDATDSEVDGENLDVSTFVDDILGKSMDEAAFLS 2928

Query: 128  AVYS 131
            +  S
Sbjct: 2929 STKS 2932


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 68   HPDEVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDLNKKVDEVIGKQMNSMSMLT 127
            HP  VR +   +DD++ +  Q+E   +    +++     D++  VD+++GK M+  + L+
Sbjct: 2872 HPKPVRTET-HYDDYYITSLQQE--DLDATDSEVDGENLDVSTFVDDILGKSMDEAAFLS 2928

Query: 128  AVYS 131
            +  S
Sbjct: 2929 STKS 2932


>Z81586-6|CAB04696.1|  484|Caenorhabditis elegans Hypothetical
           protein T05F1.7 protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 83  FESDGQRELRQIFQGQAQIHDVLRDLNKKVDEVIGKQ 119
           FE+       ++ Q Q QI ++LR LN+K  EV+ KQ
Sbjct: 76  FEATVSEIQEKLPQRQKQIDEILRALNEKRREVLQKQ 112


>U39850-1|AAA81055.3|  618|Caenorhabditis elegans Hypothetical
           protein F52C9.5 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 70  DEVRDKDGEFDDWFE-SDGQRELRQIFQGQAQIHDVLRDLNKKVDEVIGKQM 120
           ++V +   +++ W E  DG++  R+I     QI D   ++   VDE+    M
Sbjct: 471 EDVEEDGSKWESWSECQDGKQTRRKICANFNQIEDCAEEVRDCVDEIDSTDM 522


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.135    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,577,455
Number of Sequences: 27539
Number of extensions: 135224
Number of successful extensions: 316
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 7
length of query: 280
length of database: 12,573,161
effective HSP length: 80
effective length of query: 200
effective length of database: 10,370,041
effective search space: 2074008200
effective search space used: 2074008200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)