Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001352-TA|BGIBMGA001352-PA|IPR005052|Legume-like lectin,
IPR008985|Concanavalin A-like lectin/glucanase
         (206 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18398| Best HMM Match : Lectin_leg-like (HMM E-Value=2.8026e-45)    62   4e-10
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_10087| Best HMM Match : VWA (HMM E-Value=4.00001e-40)               29   2.1  
SB_18665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.2e-17)          28   4.8  

>SB_18398| Best HMM Match : Lectin_leg-like (HMM E-Value=2.8026e-45)
          Length = 414

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 25/47 (53%), Positives = 32/47 (68%)

Query: 75  SDGTTQLLSGCLRDFRNKPFPTRAKIEYYMNTLTVYFHNGMTNNEQD 121
           +DG  Q L GCLRDFRN+P P R ++ YY N LT    +GM+ +EQD
Sbjct: 123 NDGKNQHLGGCLRDFRNRPHPVRVRVRYYQNVLTEKSESGMSKDEQD 169



 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 22/41 (53%), Positives = 30/41 (73%)

Query: 33 APSLRSQKGAIWTKQPINFDWWEVDIMFKITGRGRIGADGL 73
          A SL SQ G +WT      +WWE+++ F++TGRGR+GADGL
Sbjct: 26 AISLPSQIGFMWTANKFTSEWWEIEVSFRVTGRGRVGADGL 66


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 22  NAIASGESVRLAPSLRSQKGAIWTKQPINFDWWEVDIMFKITGRGRIGADGLVSDGTTQL 81
           +   S   +RL P  +S++G++W          E   +  + G G +  D    DGT   
Sbjct: 11  STFVSSNYIRLTPDHQSKQGSLWNNVH------EHPYISAMVGNGTLPYDH-DRDGTHSQ 63

Query: 82  LSGCLRDFRNKPFPTRAKIEYYMNT--LTVYFHNGMTNNEQDYELCFRAENVVLPRGGHF 139
           + GC   FR     T A I Y  +   LT+       + + ++  CF    V LP G ++
Sbjct: 64  VEGCSAQFRGLTHDTFALIRYSTSQERLTLLVD---VDGKNEWRECFDVGGVKLPTGLYW 120

Query: 140 GLSAATGGLADDHDVI 155
           G+SAATG LAD+HD+I
Sbjct: 121 GVSAATGQLADNHDII 136


>SB_10087| Best HMM Match : VWA (HMM E-Value=4.00001e-40)
          Length = 357

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)

Query: 74  VSDGTTQLLS--GCLRDFRNKPFPTRAKIEYYMN 105
           + DGT Q+L   GC +D   KPFP RA  + Y N
Sbjct: 32  LDDGTKQILKKIGCYKD---KPFPNRALRDLYHN 62


>SB_18665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.2e-17)
          Length = 269

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)

Query: 139 FGLSAATGGLADDHDVIHFLTTALYSTQQPVY 170
           +G++ A+  +A + D ++  +T+LYS  QP Y
Sbjct: 144 YGMATASDLVAGNTDAVYSASTSLYSDHQPDY 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,583,759
Number of Sequences: 59808
Number of extensions: 254813
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 5
length of query: 206
length of database: 16,821,457
effective HSP length: 79
effective length of query: 127
effective length of database: 12,096,625
effective search space: 1536271375
effective search space used: 1536271375
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)