GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001352-TA|BGIBMGA001352-PA|IPR005052|Legume-like lectin,
IPR008985|Concanavalin A-like lectin/glucanase
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    29   0.49 
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        29   0.49 
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.64 
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    28   1.1  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   3.4  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   3.4  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.5  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   7.9  

>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 39  QKGAIWTKQPINFDWWEVDIMFKI 62
           +KG+IW ++PI+ +W + D  F +
Sbjct: 206 KKGSIWIREPIDQEWHQQDKKFSV 229


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 125 CFRAENVVLPRGGHFGLSAATGGLAD 150
           CF+ ++V+LP+G +FG+S+ +    D
Sbjct: 190 CFQVKDVILPQGYYFGVSSQSTSAKD 215


>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 75  SDGTTQLLSGCLR-DFRNKPFPTRAKIEYYMNTLTVYFHNGMTNNEQDYELCFRAENVVL 133
           +DG    ++ C   + R   +    K++Y  N   + F      +   +  CF    V L
Sbjct: 162 NDGKANEIASCSALNVRGNDY-NLGKLKYDKNAKKLRFEIAYQGSSS-FIKCFDLNEVEL 219

Query: 134 PRGGHFGLSAATGGLADDHDVIHFLTTAL 162
           P       SA TG L++ H++   L+  +
Sbjct: 220 PLTTFMSFSAHTGDLSESHEIASILSRTI 248


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 9/80 (11%)

Query: 45  TKQPINFDWWEVDIMFKITGRGRIGADGLV--SDGTTQLLSGCLRDFRN---KPFPTRAK 99
           T  P+N   W+ D  FK   +  +    LV   DG   LL   L    N   +  P R  
Sbjct: 149 TSSPLNS--WKTD--FKTPPKANVVCISLVIEGDGCASLLYEDLNQISNSCPEVAPNRQN 204

Query: 100 IEYYMNTLTVYFHNGMTNNE 119
             +   TLT  F++G+T +E
Sbjct: 205 ALFSDETLTTMFYSGVTEDE 224


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 129 ENVVLPRGGHFGLSAATGGLADDHDVIHFLTTALYSTQQPVYCARQKCF 177
           E  VLP  G   L   T     DHD++   T  +   Q  VY ++  CF
Sbjct: 648 EIYVLP--GETALGFYTAENTSDHDIVGVATYNIVPGQAAVYFSKVACF 694


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 129 ENVVLPRGGHFGLSAATGGLADDHDVIHFLTTALYSTQQPVYCARQKCF 177
           E  VLP  G   L   T     DHD++   T  +   Q  VY ++  CF
Sbjct: 648 EIYVLP--GETALGFYTAENTSDHDIVGVATYNIVPGQAAVYFSKVACF 694


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 108 TVYFHNGMTNNEQDYELCFRAENV 131
           +V FH+G  NN +D    FR EN+
Sbjct: 165 SVMFHSGQLNNVKDICNKFRPENI 188


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 92  KPFPTRAKIEYYMNTLTVYFHNGMTNNEQDYELCFRAENVVLP 134
           +P PT+  ++Y ++ +T    N + + +    +  R EN+VLP
Sbjct: 107 RPNPTQNNLKYALSYVT----NALFHFDNSSHMVIRNENIVLP 145


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 891,989
Number of Sequences: 5004
Number of extensions: 35634
Number of successful extensions: 62
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 8
length of query: 206
length of database: 2,362,478
effective HSP length: 70
effective length of query: 136
effective length of database: 2,012,198
effective search space: 273658928
effective search space used: 273658928
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)