GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001352-TA|BGIBMGA001352-PA|IPR005052|Legume-like lectin,
IPR008985|Concanavalin A-like lectin/glucanase
         (206 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0261 + 27978341-27978391,27978539-27978683,27978794-279788...    31   0.50 

>01_06_0261 +
           27978341-27978391,27978539-27978683,27978794-27978861,
           27979630-27980073,27980163-27980681,27981002-27981214,
           27981650-27981805,27982753-27982941
          Length = 594

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 113 NGMTNNEQDYELCFRAENVVLPRGGHFGLSAATGG 147
           NG  + +    L   ++N + P+GGH+GLS+A GG
Sbjct: 291 NGYGDCDISDNLTDNSKNSLSPQGGHYGLSSAGGG 325


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,834,691
Number of Sequences: 37544
Number of extensions: 240271
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 1
length of query: 206
length of database: 14,793,348
effective HSP length: 79
effective length of query: 127
effective length of database: 11,827,372
effective search space: 1502076244
effective search space used: 1502076244
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)