GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001352-TA|BGIBMGA001352-PA|IPR005052|Legume-like lectin,
IPR008985|Concanavalin A-like lectin/glucanase
         (206 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-7|CAB03169.1|  492|Caenorhabditis elegans Hypothetical pr...   124   3e-29
DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like...   124   3e-29
U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular l...    61   6e-10
Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>Z81097-7|CAB03169.1|  492|Caenorhabditis elegans Hypothetical
           protein K07A1.8 protein.
          Length = 492

 Score =  124 bits (300), Expect = 3e-29
 Identities = 59/101 (58%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 75  SDGTTQLLSGCLRDFRNKPFPTRAKIEYYMNTLTVYFHNGMTNNEQDYELCFRAENVVLP 134
           +DG+ Q+LS C RDFRNKP+P R +IEY  N LTV+  +GM    + YELC RAEN+ LP
Sbjct: 163 TDGSQQILSSCQRDFRNKPYPVRIRIEYLKNVLTVHIDDGMQPTPR-YELCMRAENIFLP 221

Query: 135 RGGHFGLSAATGGLADDHDVIHFLTTALYSTQQ-PVYCARQ 174
           R G+FG+SAATGGLADDHDV+ F   +L++ QQ PV  A Q
Sbjct: 222 RNGYFGVSAATGGLADDHDVLDFSVFSLFNEQQKPVPVAEQ 262



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 20  SFNAIASGESVRLAPSLRSQKGAIWTKQP-INFDWWEVDIMFKITGRGRIGADGLVSDGT 78
           S +AIASGE +RLAPS+RS+KG  W K+  +  + ++VDI  KI G+GR+GADGL    T
Sbjct: 52  SGDAIASGEQLRLAPSMRSRKGIAWNKRAFLESENFQVDIALKIGGQGRVGADGLGIWYT 111

Query: 79  TQL 81
           +QL
Sbjct: 112 SQL 114


>DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like
           protein protein.
          Length = 492

 Score =  124 bits (300), Expect = 3e-29
 Identities = 59/101 (58%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 75  SDGTTQLLSGCLRDFRNKPFPTRAKIEYYMNTLTVYFHNGMTNNEQDYELCFRAENVVLP 134
           +DG+ Q+LS C RDFRNKP+P R +IEY  N LTV+  +GM    + YELC RAEN+ LP
Sbjct: 163 TDGSQQILSSCQRDFRNKPYPVRIRIEYLKNVLTVHIDDGMQPTPR-YELCMRAENIFLP 221

Query: 135 RGGHFGLSAATGGLADDHDVIHFLTTALYSTQQ-PVYCARQ 174
           R G+FG+SAATGGLADDHDV+ F   +L++ QQ PV  A Q
Sbjct: 222 RNGYFGVSAATGGLADDHDVLDFSVFSLFNEQQKPVPVAEQ 262



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 20  SFNAIASGESVRLAPSLRSQKGAIWTKQP-INFDWWEVDIMFKITGRGRIGADGLVSDGT 78
           S +AIASGE +RLAPS+RS+KG  W K+  +  + ++VDI  KI G+GR+GADGL    T
Sbjct: 52  SGDAIASGEQLRLAPSMRSRKGIAWNKRAFLESENFQVDIALKIGGQGRVGADGLGIWYT 111

Query: 79  TQL 81
           +QL
Sbjct: 112 SQL 114


>U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular
           lectin protein 2 protein.
          Length = 347

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 7/84 (8%)

Query: 76  DGT-TQL---LSGCLRDFRNKPFPTRAKIEYYMNTLTVYFHNGMTNNEQDYELCFRAENV 131
           DGT TQL    +GC   FRNK   T+  I Y  +TL+++       N+  + LC    NV
Sbjct: 183 DGTHTQLGGENTGCTAKFRNKDHDTQVLIRYVGDTLSIFSD---IENKGIWNLCMSVNNV 239

Query: 132 VLPRGGHFGLSAATGGLADDHDVI 155
            LP G + G+SAATG L+D HDV+
Sbjct: 240 QLPTGYYIGVSAATGDLSDAHDVV 263



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 22  NAIASGESVRLAPSLRSQKGAIWTKQPINFDWWEVDIMFKITG-RGRIGADGL 73
           +   S   +RL    +S+ GA+W  QP+    WE+ + FK+TG  G +  DG+
Sbjct: 70  STFVSSNQIRLTADEQSKAGALWNTQPVWSRDWELQVSFKVTGSTGDLFGDGM 122


>Z49207-7|CAA89072.1|  512|Caenorhabditis elegans Hypothetical
           protein R07E3.5a protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 101 EYYMNTLTVYFHNGMTNNEQDYE 123
           EYY+NTL   F  G T NEQ YE
Sbjct: 27  EYYVNTLVYIFEWGATLNEQ-YE 48


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,914,980
Number of Sequences: 27539
Number of extensions: 199823
Number of successful extensions: 322
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 7
length of query: 206
length of database: 12,573,161
effective HSP length: 78
effective length of query: 128
effective length of database: 10,425,119
effective search space: 1334415232
effective search space used: 1334415232
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)