GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001352-TA|BGIBMGA001352-PA|IPR005052|Legume-like lectin,
IPR008985|Concanavalin A-like lectin/glucanase
         (206 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16330.1 68415.m01869 hypothetical protein includes At2g06610...    27   6.8  
At2g12140.1 68415.m01308 hypothetical protein includes At2g06610...    27   6.8  
At1g45080.1 68414.m05168 hypothetical protein includes At2g06610...    27   6.8  

>At2g16330.1 68415.m01869 hypothetical protein includes At2g06610,
           At5g28266, At3g42620, At4g07696, At2g06690, At2g16160,
           At2g05480, At2g12140, At1g45080, At2g16330
          Length = 233

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 104 MNTLTVYFHN-GMTNNEQDYELCFRAENVVLPRGG 137
           +NT +V  HN G+     DY +CF  + +V    G
Sbjct: 77  INTFSVRLHNEGIHATSHDYRICFMDQTIVTKVSG 111


>At2g12140.1 68415.m01308 hypothetical protein includes At2g06610,
           At5g28266, At3g42620, At4g07696, At2g06690, At2g16160,
           At2g05480, At2g12140, At1g45080, At2g16330
          Length = 228

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 104 MNTLTVYFHN-GMTNNEQDYELCFRAENVVLPRGG 137
           +NT +V  HN G+     DY +CF  + +V    G
Sbjct: 77  INTFSVRLHNEGIHATSHDYRICFMDQTIVTKVSG 111


>At1g45080.1 68414.m05168 hypothetical protein includes At2g06610,
           At5g28266, At3g42620, At4g07696, At2g06690, At2g16160,
           At2g05480, At2g12140, At1g45080, At2g16330
          Length = 237

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 104 MNTLTVYFHN-GMTNNEQDYELCFRAENVVLPRGG 137
           +NT +V  HN G+     DY +CF  + +V    G
Sbjct: 77  INTFSVRLHNEGIHATSHDYRICFMDQTIVTKVSG 111


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,683,293
Number of Sequences: 28952
Number of extensions: 191676
Number of successful extensions: 333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 3
length of query: 206
length of database: 12,070,560
effective HSP length: 78
effective length of query: 128
effective length of database: 9,812,304
effective search space: 1255974912
effective search space used: 1255974912
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)