GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001351-TA|BGIBMGA001351-PA|IPR001395|Aldo/keto reductase
         (340 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 64  DTEQAVIYALEAGYTHIDTAYKYGIEDQVGRALTKKFSE 102
           DT++  +     GYT  D  YK+    QV  A   K S+
Sbjct: 140 DTQRCPLQFGSFGYTKRDVIYKWNSARQVAIAEDMKLSQ 178


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 238  GSLFPSKAQPDAPPPRIDDERLVSIAQKYNKTVPQVALRFLIELGAVVL 286
            G++ P++  PD      D++ +       N  VP VA   +I +  +V+
Sbjct: 1557 GTIAPARELPDVNGGGNDEDPMKIFMANLNLVVPVVAAILVIIVAVIVI 1605


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 308  PEEFNLLKSFDTGYRTLPQTKWSKHPDYP 336
            P   ++  S D+ Y TL +T W +    P
Sbjct: 1329 PLSEHIYSSIDSDYSTLERTAWRQQQPPP 1357


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 175 KKLGLTKSIGISNFNQEQIQRIIDSGLEKP 204
           K  GLTK++ I N+N +  + I+ S    P
Sbjct: 94  KLYGLTKNLEIKNYNIDWDKCILSSESYNP 123


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,763
Number of Sequences: 429
Number of extensions: 4635
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 340
length of database: 140,377
effective HSP length: 58
effective length of query: 282
effective length of database: 115,495
effective search space: 32569590
effective search space used: 32569590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)