Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001350-TA|BGIBMGA001350-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (507 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    25   1.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   8.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   8.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 273 SMESEEEPVELDNARSCPDPRSE----DDDDTKRSKSTNTVSESSDLIPE 318
           S+ S++E  E+++  S  D   E    DDDDT   +S +  S  + LIP+
Sbjct: 18  SLLSKKEDEEVEHRLSDRDDDDENITVDDDDTDGRESLSPSSAHTVLIPQ 67


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 97   LSSPDENF-PDLIPKKVHKIEDEKDLSLSSIEDER 130
            L+  +E F  +LI + +H IED+K    + ++D R
Sbjct: 1188 LNRNEETFWNELIEQYLHPIEDDKKKVSAELKDLR 1222


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 97   LSSPDENF-PDLIPKKVHKIEDEKDLSLSSIEDER 130
            L+  +E F  +LI + +H IED+K    + ++D R
Sbjct: 1188 LNRNEETFWNELIEQYLHPIEDDKKKVSAELKDLR 1222


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)

Query: 489 PVEPNAIPET 498
           PV+PNAIP T
Sbjct: 9   PVQPNAIPTT 18


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,505
Number of Sequences: 317
Number of extensions: 5644
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 4
length of query: 507
length of database: 114,650
effective HSP length: 60
effective length of query: 447
effective length of database: 95,630
effective search space: 42746610
effective search space used: 42746610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)