Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001350-TA|BGIBMGA001350-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (507 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              23   4.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   6.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   7.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   7.9  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 39 ILRFSDHDKI-NFNDSLIHKMSNLHLDSPKIN 69
          I +F+ +D   NFN+ ++ +++ ++LD  ++N
Sbjct: 67 IKKFNAYDDGGNFNEVVVREIAEIYLDENEVN 98


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 260 EDDRCSLDSVSGCSMESEEEP 280
           ED +CS++S++  +  S  +P
Sbjct: 399 EDQKCSIESITSVNSTSSPKP 419


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 135 SPQRNTSKNNLYFTENFVTADSQILNDTLDLPPDV 169
           S Q+  SK N    E      S  L D LD+  DV
Sbjct: 277 SAQKTESKTNNIVVEGVSFGQSVGLKDDLDIDDDV 311


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 97  LSSPDENFPDLIPKKVHKIEDEKDL 121
           +S  DE+  D+ P+K +  E EK L
Sbjct: 431 MSGLDESLSDVTPRKKYPFELEKAL 455


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,442
Number of Sequences: 429
Number of extensions: 6943
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 507
length of database: 140,377
effective HSP length: 61
effective length of query: 446
effective length of database: 114,208
effective search space: 50936768
effective search space used: 50936768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)